BAC Information

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BAC

Clone NameMSMg01-352K20
Chromosome19 (Build37)
Map Location 58,220,681 - 58,378,803
singlet/doubletdoublet
Overlap geneGfra1
Upstream geneAblim1, EG668259, AI450540, Trub1, LOC100043038, Atrnl1
Downstream geneLOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352K20.T7 (MSMg01no352_k20.b1)MSMg01-352K20.TJ (MSMg01no352_k20.g1)
ACCAG463745AG463746
length785760
length of high quality
(start - end)		412 (69 - 480)356 (73 - 428)
definitionCHROMAT_FILE: MSMg01no352_k20.b1 PHD_FILE: MSMg01no352_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:18 2005CHROMAT_FILE: MSMg01no352_k20.g1 PHD_FILE: MSMg01no352_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,220,681 - 58,221,092)(58,378,448 - 58,378,803)
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAACAAACTTTCCTAGAAGAAGAATAGGTGTGTTCTGTTTGCCT
GGGATTTTCTTTAGAACAGCTAAAGTCGCCCAGAGGAATAATTAATCCTG
TGGCTGATGGTAGCAGCAGTATAGGGAGCCAAGGAGCCCCCTTCACTTGG
CAAAGCTCCTTCAGACCTGTGGTGTAACTGGCGTGAAGTACTCTGGCTGC
AAAGGGGGAGCATCGTGTCTGTAAGAGGAGGGACTGCACACCTGAGCCAT
GTGCCCCAGCACTCCAACCAGATCTTTTGAAGCCGAATCCCTGTGATAGC
ATTTAATCAATTCTTCTTAAAGAGACTTGAGTCTGTGGAGTATAAAGATG
ATTAAGGACATTTGCAGGCTGTCACAAAGCCGGGCATGAGAAGTGCAGGC
CCACTGTTGCTATAAGCACAGATCAGAGCCGTGTGGTGCCATCTAAAGTT
TCCAGGCTTCTTGGGTCTCCAGACAAAGATTGAACCAGGGGCACCTAGTT
AGTGACAGAAACACAGACAGTTCATTTTACCCCACAAAACACATCTCCTT
ATTACGGTCGCATATCCACGCCCTCTATAAATTCGTGGCACCTCCTTTAT
CTAAGAGCTCCTTCCCTTGGTTCCTCCCCCTCCCCCCCCCATCTTTTTTC
TCTCTTCTCATATCTCCCCCCCTGTTTTTATTTTCCCCCATCCCCTCCTC
CCATTTTGTGGCCCTTTCCCTACCCCCTTCCACTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTACCCTCAAAGGAACCTGGCAGTTGAT
GGGTTCATTTTCGTCCGGCGAGCCTGTGATACCTGGTTCACGCAGTGACA
TCTTCTCTGCCACTGTTCCCTCCGTGGGGTTCCAGGCACTGCTGGGTCAT
GCCTCACTAGCTATACATCCCTTACGTGCAGACCACCTCTGTATCACACA
GCTGCTTTTGTTTTATGTAGATTTCAGAAAATACCTTTCATTGGATATCA
GTGCACACACAAAGGGACCACCATCTCTCCTCAAGGGCCTACCCCAAGAG
ATGTGGAATAAGAGTTTATTAATTTTCAGTTATCATAAAGCAGTTTTCAT
GTCACAGGGGAAAAACCCAGAGGACTATAGACATTCAAAGACACAATTCA
CCATTCTTGGGTTCAACAGCCCAGCATTACACATCTCACGGTCTCAGGTA
CCATCTGCCTGTCATGGATGAAGCCCAATNACTATTCCCCAGCACCCTAT
AAACTTCGTTGACCTTTCTCCCTATAGACACATGCTATGGCATTACAATT
CTTTGTCCTCCTTTTTCCCTCCACTATCCTTGTTCACTTTGCATTTGTTA
CAAACCCGTTTCATAACCTAACCAATTCTCCCTCCCCCTCCTTTCTCCCT
CACACCTTTCCTACATTATTTTTCCTTTCTCCCCTCTTTTTCCCCTACTT
TCCCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_k20.b1 MSMg01no352_k20.b1 CHROMAT_FILE:
MSMg01no352_k20.b1 PHD_FILE: MSMg01no352_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:18 2005
         (412 letters)



>mm_chr19_58220481_58221292
          Length = 812

 Score =  743 bits (384), Expect = 0.0
 Identities = 405/412 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaagaagaataggtgtgttctgtttgcctgggattttctttagaacagctaaagtcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaagaagaataggtgtgttctgtttgcctgggattttctttagaacagctaaagtcg 260

                                                                       
Query: 61  cccagaggaataattaatcctgtggctgatggtagcagcagtatagggagccaaggagcc 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 cccagaggaataattaatcctgtggctgatggtagcagcagtacagggagccaaggagcc 320

                                                                       
Query: 121 cccttcacttggcaaagctccttcagacctgtggtgtaactggcgtgaagtactctggct 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccttcacttggcaaggctccttcagacctgtggtgtaactggcgtgaagtactctggct 380

                                                                       
Query: 181 gcaaagggggagcatcgtgtctgtaagaggagggactgcacacctgagccatgtgcccca 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaagggggaacatcgtgtctgtaagaggagggactgcacacctgagccatgtgcccca 440

                                                                       
Query: 241 gcactccaaccagatcttttgaagccgaatccctgtgatagcatttaatcaattcttctt 300
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcactccaaccagagcagttgaagccgaatccctgtgatagcatttaatcaattcttctt 500

                                                                       
Query: 301 aaagagacttgagtctgtggagtataaagatgattaaggacatttgcaggctgtcacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagagacttgagtctgtggagtataaagatgattaaggacatttgcaggctgtcacaaa 560

                                                               
Query: 361 gccgggcatgagaagtgcaggcccactgttgctataagcacagatcagagcc 412
           |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccggggatgagaagtgcaggcccactgttgctataagcacagatcagagcc 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no352_k20.g1 MSMg01no352_k20.g1 CHROMAT_FILE:
MSMg01no352_k20.g1 PHD_FILE: MSMg01no352_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:18 2005
         (356 letters)



>mm_chr19_58378248_58379003
          Length = 756

 Score =  665 bits (344), Expect = 0.0
 Identities = 353/356 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaccctcaaaggaacctggcagttgatgggttcattttcgtccggcgagcctgtgatac 60
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 556 ttaccctcgaaggaacctggcagttgatgggttcattttcgtccggcaagcctgtgatac 497

                                                                       
Query: 61  ctggttcacgcagtgacatcttctctgccactgttccctccgtggggttccaggcactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctggttcacgcagtgacatcttctctgccactgttccctccgtggggttccaggcactgc 437

                                                                       
Query: 121 tgggtcatgcctcactagctatacatcccttacgtgcagaccacctctgtatcacacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgggtcatgcctcactagctatacatcccttacgtgcagaccacctctgtatcacacagc 377

                                                                       
Query: 181 tgcttttgttttatgtagatttcagaaaatacctttcattggatatcagtgcacacacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgcttttgttttatgtagatttcagaaaatacctttcattggatatcagtgcacacacaa 317

                                                                       
Query: 241 agggaccaccatctctcctcaagggcctaccccaagagatgtggaataagagtttattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agggaccaccatctctcctcaagggcctaccccaagagatgtggaataagagtttattaa 257

                                                                   
Query: 301 ttttcagttatcataaagcagttttcatgtcacaggggaaaaacccagaggactat 356
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 256 ttttcagttatcataaagcagttttcatgtcacaggggagaaacccagaggactat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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