NNGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTCCAGGTTATAATGCTTGATTTCAACACCAGTGATAT
TAGTTATACAGACTCACTCTCTCCAGTCTCATATAATTAGGATACTTAAG
GACCAGTTTTAAACACTTAACCGCTTTGTGTGGCCAGTATCTAGAGCAAA
CAAGTAGAGCAGGAGGGTGAATATCCCCCCAGAGTCAGCTCAGGATGTCT
CTACAGCATGGCCTGAAATTCTTTCAACTTCCACATCCCACCTGACCACA
ATGGAATTATAATGAAATGAAGAGATGCAGAATTACAAAGAATATAAGCT
CTTCTACTGAAAGCCCTGAACAGCCAGGGTACCATGGTTTGAGCTGGTGA
ACACAGAGCTTTCAAAGAGAATTTTAGATTGACAGCTTCCAAGGGGATAG
GCCTATATGTTAGTCTCTTAGATACAGCAATTAAACTAGACATCATCGGG
TTTCTAGAACCTTCTGCTTGGCTAAGGTTTGATATCAAAAGTAAAATCTT
CCTTATTCTATTTGAACAAGGTGTCATGCTGCTAGAAAGCTCCCCAGCAC
AGCTTCCATCCTTTTCTTCCTTCGCTCAGGAAAGGTGGAAGTGTGTAAGA
CAACAAACTACTAATGGAAGCACTCTGTGATGCCCCATGTGCACTACTAA
GGAAGTTAACCCTAGCAGTGTCTGCTCTCAGAGCTCTTGGGATTTTTATC
CA

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGACCACAAGCCCACTGA
CACACTTCTCTGGCTTTGAGATGAGTTCTTTCGTTAGGTTAGAAACAATG
TTATGTGGAATACCACGATTGTGAACAGGCTTTTCTAAAAATAAGTGCAG
AGATGGCAGTCTTGGCAGAAGCACTGCATTCAGGAAATGCAGACCCATAC
CCAGATCAAGTATCTTAGGCCAGTAATGACAAAATGCTGTCTTTTCTGTG
ACTGATCAAAGTGGTACAGAGTAGTCAACTGAACACTGGCTAGTCACCCA
GGGAAGGGTGGCACATGGAAAGCTTGGGATTGGTCTCTGCTGATGGCAGG
CTGTCAGTCAGCACAAGCCAGGCAGGTCAGCCTTGGTCATTAGAAGGCCG
TGTTGTTGAGTTTGTACACAACTACATACTCCCTACCTCGGTCACTTTGT
TCATGAGCCCAGGGATGACTAAGAAAAGAATTTAGTTGCTATCCAGAGAA
TAGATCATCCTAACTACTAGATTATTAAAGTTCTCTGCTGATGTCATATT
TTTGGAGGACACTTACATGACACACAAATAGCATGATATATTTTTGCTAG
TTTTTAGAAATCTATCTGCACACTCTTTCTCCCAATACTAATTTTAACAT
GGTGTGGCNNGTTAGGTCCCTTCCCATCTGGCTGCCATCCATTCAAATCT
TGGTTCACCT

Query= MSMg01no353_a03.b1 MSMg01no353_a03.b1 CHROMAT_FILE:
MSMg01no353_a03.b1 PHD_FILE: MSMg01no353_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:45 2005
         (584 letters)



>mm_chr19_26108735_26109718
          Length = 984

 Score = 1108 bits (573), Expect = 0.0
 Identities = 579/581 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttccaggttataatgcttgatttcaacaccagtgatattagttatacagact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ggaattctttccaggttataatgcttgatttcaacaccagtgatattagttatacagact 725

                                                                       
Query: 64  cactctctccagtctcatataattaggatacttaaggaccagttttaaacacttaaccgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cactctctccagtctcatataattaggatacttaaggaccagttttaaacacttaaccgc 665

                                                                       
Query: 124 tttgtgtggccagtatctagagcaaacaagtagagcaggagggtgaatatccccccagag 183
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tttgtctggccagtatctagagcaaacaagtagagcaggagggtgaatatccccccagag 605

                                                                       
Query: 184 tcagctcaggatgtctctacagcatggcctgaaattctttcaacttccacatcccacctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tcagctcaggatgtctctacagcatggcctgaaattctttcaacttccacatcccacctg 545

                                                                       
Query: 244 accacaatggaattataatgaaatgaagagatgcagaattacaaagaatataagctcttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 accacaatggaattataatgaaatgaagagatgcagaattacaaagaatataagctcttc 485

                                                                       
Query: 304 tactgaaagccctgaacagccagggtaccatggtttgagctggtgaacacagagctttca 363
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 484 tactgaaagccctgaacagccaggctaccatggtttgagctggtgaacacagagctttca 425

                                                                       
Query: 364 aagagaattttagattgacagcttccaaggggataggcctatatgttagtctcttagata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aagagaattttagattgacagcttccaaggggataggcctatatgttagtctcttagata 365

                                                                       
Query: 424 cagcaattaaactagacatcatcgggtttctagaaccttctgcttggctaaggtttgata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cagcaattaaactagacatcatcgggtttctagaaccttctgcttggctaaggtttgata 305

                                                                       
Query: 484 tcaaaagtaaaatcttccttattctatttgaacaaggtgtcatgctgctagaaagctccc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcaaaagtaaaatcttccttattctatttgaacaaggtgtcatgctgctagaaagctccc 245

                                                    
Query: 544 cagcacagcttccatccttttcttccttcgctcaggaaagg 584
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cagcacagcttccatccttttcttccttcgctcaggaaagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)