BAC Information

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BAC

Clone NameMSMg01-353M16
Chromosome19 (Build37)
Map Location 43,806,624 - 43,807,175
singlet/doubletsinglet
Overlap geneEntpd7
Upstream gene4833409A17Rik, Hps1, LOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28
Downstream geneCox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353M16.T7 (MSMg01no353_m16.b1)MSMg01-353M16.TJ (MSMg01no353_m16.g1)
ACCAG464582AG464583
length752760
length of high quality
(start - end)
554 (49 - 602)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no353_m16.b1 PHD_FILE: MSMg01no353_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:46 2005CHROMAT_FILE: MSMg01no353_m16.g1 PHD_FILE: MSMg01no353_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTCATGTCCCTACTTTTCATTAGGGCTGTGAGGTTGACATC
TTAGGACTTCTCAGTTGTCTCCCTTCTCCATCATTCTAATTTTTATGTCC
TGTGAGTGAGCCTCTGCTTTTTTTTTTTTAATGTTGCTATAAAATGCTCT
TACCAGCCATTTGCTTCCTCAGGGAACATTTAGCTTCATCTTGGTTTCTA
TATAGCTGTCTTGGTGTGTTGAGAGATCTAGTCAGAAGTCCCTGGGCAGG
TTAACAGTGGCCATGTTCATGTTCTCCAACTGAGACTGGAGGAGGGAGGT
GGTAATGGTCTGGTTGTAAAGCTCTCATTACTGATCTTTCTCTTTGTCCT
GATGCTACTAGAAGCTTCCATCTGTCAAGCACTTATTTGTATCCCTCTTA
ATGTTGTGTTCTTTACTATATATCATTTAATCATTACGGCAGCCTTTCGG
ATTGATACCCCTACATTCTTTTTATAGTTTGGAAAAAAAATCTCAGGATA
CCTATCTTTATCATTTCTCAATATAAATATATTTCTTAATTTATTTTAAT
TAGCCTTTGAGTTTCTGTTTGGAGCATTGTATCCTGTTTATTGCTTTCGT
ATTATGGGGTCCAGACTTTCCTTCCTTACGGAAAGGCTTCCCGGAATTCC
CTAAGCTAATAATTCTGTTTAATGGAACTGAAGATATTGCTCCCCACTCC
CN
TTCCGATGTAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCTAGGGCTACAGAGTG
AGACTCTGTCTCATAAATAAATAAATAAATAAATAAATAAATAAATAAAG
AATAAATAAGTCAAACTAATTTGTACTTTTTTTAAAAAATATTTTTGCTT
TTAAAAAAAAAGATTTATTTATTATTATATCTAAGTACACTGTAGCTGTC
TTTTATATACACCAGAAGAGGGCGTCAGATCTCATTACGGATGGTTGCGA
GCCATCATGTGGTTGCTGGGATTTTATACTCAGGACCTTCGGAAGAGCAA
TCGGTGCTTTTAACCACTGAGCCATCTCTCCAGGCCCCCCCCCTTTTTTT
TTTTGGTTTAAGATGATGAACGTTTGTGTAGAGCCAGGGTGTCCCCCAGG
GGAAGAATGTTTCCTTAGGTGCTACGAGGCCCTTCATTCAATCCTGGTAT
CATCCCCACCAAGGAGTAAAAGAATTTAAGATAGTAATAATCTTTCCCTT
TTTCTCGTCGGTGCACAGGAAGAGAGTAAGTACCCTTCACCCACGTGGTA
TCTGCCCCAAGGTGTTGGCTCACAACAAATGACCTCGGCTAAATCAACCG
GGTTTTATCCCGTTACAAAGCAGCAAACCTAGTCTGAGCCTATGAACAGT
CTGTCCGTTCAAAATACCAATGAGGTCTTCCTTCTCTGGTTGAAGGCCTC
TTGTCACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_m16.b1 MSMg01no353_m16.b1 CHROMAT_FILE:
MSMg01no353_m16.b1 PHD_FILE: MSMg01no353_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:46 2005
         (554 letters)



>mm_chr19_43806420_43807375
          Length = 956

 Score = 1004 bits (519), Expect = 0.0
 Identities = 544/553 (98%), Gaps = 4/553 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcatgtcc-ctacttttcattagggctgtgaggttgacatcttaggacttct 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcatgtcatctacttttcattagggctgtgaggttgacatcttaggacttct 264

                                                                       
Query: 64  cagttgtctcccttctccatcattctaatttttatgtcctgtgagtgagcctctgctttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagttgtctcccttctccatcattctaatttttatgtcctgtgagtgagcctctgctttt 324

                                                                       
Query: 124 ttttttttaatgttgctataaaatgctcttaccagccatttgcttcctcagggaacattt 183
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttttt-aatgttgctataaaatgctcttaccagccatttgcttcctcagggaacattt 383

                                                                       
Query: 184 agcttcatcttggtttctatatagctgtcttggtgtgttgagagatctagtcagaagtcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcttcatcttggtttctatatagctgtcttggtgtgttgagagatctagtcagaagtcc 443

                                                                       
Query: 244 ctgggcaggttaacagtggccatgttcatgttctccaactgagactggaggagggaggtg 303
           ||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||
Sbjct: 444 ctgggcaggttaacagtggccatgttcatgggctccaattgagactggaggagggaggtg 503

                                                                       
Query: 304 gtaatggtctggttgtaaagctctcattactgatctttctctttgtcctgatgctactag 363
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 gtaatggtctggttgtaaagctctcattactgatcttcctctttgtcctgatgctactag 563

                                                                       
Query: 364 aagcttccatctgtcaagcacttatttgtatccctcttaatgttgtgttctttactatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagcttccatctgtcaagcacttatttgtatccctcttaatgttgtgttctttactatat 623

                                                                       
Query: 424 atcatttaatcattacggcagcctttcggattgatacccctacattctttttatagtttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atcatttaatcattacggcagcctttcggattgatacccctacattctttttatagtttg 683

                                                                       
Query: 484 gaaaaaaaa--tctcaggatacctatctttatcatttctcaatataaatatatttcttaa 541
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaaaaaaaaaatctcaggatacctatctttatcatttctcaatataaatatatttcttaa 743

                        
Query: 542 tttattttaatta 554
           |||||||||||||
Sbjct: 744 tttattttaatta 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 956
Length adjustment: 10
Effective length of query: 544
Effective length of database: 946
Effective search space:   514624
Effective search space used:   514624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)