Query= MSMg01no353_n18.b1 MSMg01no353_n18.b1 CHROMAT_FILE:
MSMg01no353_n18.b1 PHD_FILE: MSMg01no353_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:51 2005
(490 letters)
>mm_chr19_55025446_55026334
Length = 889
Score = 839 bits (434), Expect = 0.0
Identities = 473/486 (97%), Gaps = 1/486 (0%)
Strand = Plus / Minus
Query: 5 gaattcttcagtctgtgttcgagttccaaaacatgcatcggagaaaagcataccccaaac 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaattcttcagtctttgttcgagttccaaaacatgcatcggagaaaagcataccccaaac 630
Query: 65 atttctaaacaggatgcatctttatgaaattaattctacctgtcaaagagttgtcttgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atttctaaacaggatgcatctttatgaaattaattctacctgtcaaagagttgtcttgat 570
Query: 125 gttagagtttgtagacatttaattaaataggagtgaaatctaattttgcagttttctttt 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gttagagtttgtagatatttaattaaataggagtgaaatctaattttgcagttttctttt 510
Query: 185 atattttaaagtggttttttttttccagctctcagacatttcacagatgctgaaaattcc 244
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 509 atattttaaagt-gttttttttttccagctctcagacatttcacagatgctggaaattct 451
Query: 245 gtaggcacaccatgtggacagacttgaaatacaacggaccaaggaaataagaacagagct 304
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 450 gtaggcacaccttgtggacagacttgaaatacaacggactaaggaaataagaacagagct 391
Query: 305 taccgacaatggcaggggtggggtcactgcaagagaagttgtgtaacatcagagaagcac 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 390 taccgacaatggcaggggtggggtcactgcaagagaagttgtgtaaaatcagagaagcac 331
Query: 365 aaagtagtgagtgtggtatttacttatgctcacttcagccactggactgggtcactgtct 424
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 330 aaagtagtgagtgtggtatttacttacgctcacttcagccactggactgggttactgtct 271
Query: 425 ttcctcctaggtagcaactgggtttttagctttgaacagccaagggatgggcggcagctt 484
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 270 ttcctcctaggtagcaactgggtttttagctttgaacagccatggggtgggcggcagctt 211
Query: 485 tgatag 490
|||||
Sbjct: 210 agatag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 889
Length adjustment: 10
Effective length of query: 480
Effective length of database: 879
Effective search space: 421920
Effective search space used: 421920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_n18.g1 MSMg01no353_n18.g1 CHROMAT_FILE:
MSMg01no353_n18.g1 PHD_FILE: MSMg01no353_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:51 2005
(240 letters)
>mm_chr19_54851161_54851800
Length = 640
Score = 456 bits (236), Expect = e-133
Identities = 239/240 (99%)
Strand = Plus / Plus
Query: 1 aacttagagtttgggtttagagatattttgcatatttcctaatcttactgctgactctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttagagtttgggtttagagatattttgcatatttcctaatcttactgctgactctta 260
Query: 61 aattctttattgcatattttgcctttgtttatgatttaaaaaaataggagcattgaactt 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 aattctttattgcatattttgcctttgtttatgattaaaaaaaataggagcattgaactt 320
Query: 121 ttcttaataattatacttataaagtacatgcttgtattaatttttcatgttattacattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttaataattatacttataaagtacatgcttgtattaatttttcatgttattacattt 380
Query: 181 gggggagaaatttattgtctgcaaggcaaggaatgtgaactactcaattgtcgatttggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggagaaatttattgtctgcaaggcaaggaatgtgaactactcaattgtcgatttggt 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
