BAC Information

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BAC

Clone NameMSMg01-354E04
Chromosome19 (Build37)
Map Location 46,035,830 - 46,036,241
singlet/doubletsinglet
Overlap gene9130011E15Rik
Upstream gene6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, EG627939
Downstream gene4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354E04.T7 (MSMg01no354_e04.b1)MSMg01-354E04.TJ (MSMg01no354_e04.g1)
ACCAG464934AG464935
length760764
length of high quality
(start - end)
439 (49 - 487)449 (80 - 528)
definitionCHROMAT_FILE: MSMg01no354_e04.b1 PHD_FILE: MSMg01no354_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:22 2005CHROMAT_FILE: MSMg01no354_e04.g1 PHD_FILE: MSMg01no354_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATGTCTTGATCTGATATGTCTGAAGAGAGCAACATTGTACT
CATATACATAAAATAAATTAAAAAAAAAAAAAAAGGAAGCCGGGCATGGT
GGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTC
TGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGAG
CTATACCGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAA
AAAGGAAAAACATCTGGAGGGTATACCCCATCCTAGGTTCTTGACTTAGG
ATCTGAGGATGAACTTCAGGGAATGGGGCGTGGGGGTTGAGGGGGGGTAA
CAGCTCANNGAACAGTATATACCAGGCCCTGGCTTTCACACCCAGCAACC
TCTCAAAACCAAACCAGTGAGATGGAAACAAACATTAGCCCCACCCCCTG
CTCACTCCCTGAGGATNAACAGCCANAATTTCGATCATATCTTTAATTTG
AAACCCACGAATGTAACGAACAGGGTTCTCTGATGAGATACTCCTGAAAC
TCACACCTCGACCACTGGGNAAGTTAGGCATTTCTTGTGCATATGGGGNA
NCGAGAATCGGCCTCTCATAGTCTCCGAGTTTTATCCCCTATCCGCAGCC
TTAGCTCTCTTTGCAATAAGACTTCCCCTCTGTATGTAACACTCGATATG
AAGCGGNAAN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCGTCACCTTACGGTGTT
CTTTTGGGAAGGTGAGTGGTTAGTACTTGCAGAAGTCCTGTCTGGACAAC
GTGCTGTGGCTGGAGAGCATGCATGCCTCTAATTCCCACCCTCACCAGGG
AGATGGGAGGCCAGAGCCAACAGGCGTCTCTGAGAGCCAAAGACCAGCCT
GCGCAGTATAGTGAGAGTCAGGGAATCTAAGGCTACATAGTGAGGCCTTG
TCTTGGAAAGAAAAAAAGCTTTGCTTTTTCTACTGTTGCTGTCAACATGG
TGAGATCTGTAGGTCAGCCAACTGCTGATTTTTCTTTTCCAAAGACCCAC
CTGCATTGGATCTTGCATGACAGTCTGTAGTGTCATATAAAACACCATAA
ACATTTGGGTTGTTAAGAAAGCAAAACCTTCGTCTGTTCCCAGTTTACTG
TGAAAGATGTGCTTTGAAACTTGATTAAATGAGATCTATGTGCGTGATTA
GTTTTTCAGTCTCTGGTTTTAGGTTTCCTAACAATAAATTTTTTTTGTTA
TGCTGTAACAGTTGCCATGTCTGAATATTTTGATTACTCTCCCTCCTTGG
GTTGGAATTGGTTGCTTGTTCCTCCCAAAAATTTTCTTCTTATTCTCAGC
GTTGATGAATGATTTTCAATATTTTATCATTTTATCTTCCTCTTCTATTG
TTCTTCATTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_e04.g1 MSMg01no354_e04.g1 CHROMAT_FILE:
MSMg01no354_e04.g1 PHD_FILE: MSMg01no354_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:22 2005
         (449 letters)



>mm_chr19_46035393_46036241
          Length = 849

 Score =  743 bits (384), Expect = 0.0
 Identities = 405/412 (98%)
 Strand = Plus / Minus

                                                                       
Query: 38  tggttagtacttgcagaagtcctgtctggacaacgtgctgtggctggagagcatgcatgc 97
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 849 tggttagtacttgcagaagtcctgtcaggacaacgtgctgtggctggagagcgtgcatgc 790

                                                                       
Query: 98  ctctaattcccaccctcaccagggagatgggaggccagagccaacaggcgtctctgagag 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctctaattcccaccctcaccagggagatgggaggccagagccaacaggcgtctctgagag 730

                                                                       
Query: 158 ccaaagaccagcctgcgcagtatagtgagagtcagggaatctaaggctacatagtgaggc 217
           |||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 729 ccaaaggccagcctgcacagtatagcgagagtcagggaatctaaggctacatagtgaggc 670

                                                                       
Query: 218 cttgtcttggaaagaaaaaaagctttgctttttctactgttgctgtcaacatggtgagat 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cttgtcttggaaagaaaaaaagctttgctttttctactgttgctgtcaacatggtgagat 610

                                                                       
Query: 278 ctgtaggtcagccaactgctgatttttcttttccaaagacccacctgcattggatcttgc 337
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 609 ctgtaggtcagccaactgctgatttttcttttccaaggacccacctgcattggatcttgc 550

                                                                       
Query: 338 atgacagtctgtagtgtcatataaaacaccataaacatttgggttgttaagaaagcaaaa 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atgacagtctgtagtgtcatataaaacaccataaacatttgggttgttaagaaagcaaaa 490

                                                               
Query: 398 ccttcgtctgttcccagtttactgtgaaagatgtgctttgaaacttgattaa 449
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccttcatctgttcccagtttactgtgaaagatgtgctttgaaacttgattaa 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)