BAC Information

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BAC

Clone NameMSMg01-354G09
Chromosome19 (Build37)
Map Location 34,008,683 - 34,009,316
singlet/doubletsinglet
Overlap genenone
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127
Downstream geneLipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354G09.T7 (MSMg01no354_g09.b1)MSMg01-354G09.TJ (MSMg01no354_g09.g1)
ACCAG465037AG465038
length742760
length of high quality
(start - end)		638 (52 - 689)466 (80 - 545)
definitionCHROMAT_FILE: MSMg01no354_g09.b1 PHD_FILE: MSMg01no354_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:32 2005CHROMAT_FILE: MSMg01no354_g09.g1 PHD_FILE: MSMg01no354_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTCTTATATCTTATTCTCCAATAGAACAAGCACCTTTTA
AATTGTAAACTATCTCAACAATTATGTTATCATCCTAGAAAATTTTTGAT
ATATCTGTCTCTCACATGGCATACTGGAAACCAAAATGGAAATCGCATGT
TTAACTTCTAATCTCCTTATATTCCTAAGAGGTTCCCAGGCATTCACACT
GGACTTTGGTTTAGGTTTGAAAATCTGGTTCTAGATGCCACTTGCTCTGC
TGGTTATTTTGGGATATCAAGAAACAGAGAAAAGGGAGCAGGGAGAGCGT
AAAGGGGAGTAAGAAGAAAGAGAGGGAGAAAGAGGAGGGGTACCTCCAAG
TACCCAACCAGGCATGCCTAGGGTGGCAAGGCTCCATAAACCCCCAAATC
CACAGTCTTCTAGTGTACAGTGTTCAAACCCAAGAACCTATGAAAGTTAT
CTCACTCACAATCTATTTGAACATCACATCATGTAGCCTATCTTCTAGGA
GGCTCAATATCCTGGCTTGTGACTTCTATATAGCAAAAGTTTGAGTTCCT
TTTCAAATACCAAGTTGACAAGAGATTATATTTAACTTACTTGTGGATCT
TGCTATATGGTTAACGGATACCATGATCTAGGCTGATTACCTAACCCTAG
TCCCCCATTATAGCCATATCCGTGACGCTAATGTTTTTCATG

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACTGAATGGCTAGGAAGC
ACCTAAAGAAATATTCAACATCCTTATTCATCAGGAAAATTCAAATCAAA
ACAACTCTGAGATAACACCTCACTCTAGTCAGTATGGCTAAGATAAAAAA
CTGAGGTTAGAGAAGATGCTAGTGTGGATGTGGAAAGAGAAACACTTTTC
TATTGTTGGTGGGATTGCAAGCTTGGAGCACCACTCTAGATATCAGTCTG
GCAGTTCCTATGAATATTAGACCTGAGGACTAGATTCTCCTGAGCAGATA
CCCAAAAGATGCTACAACATATATCAAGTACTCTTTCTCCACTATGTTCA
TTGCAGCCTTATTTATAGTAGCCAGAAGCTGGAATGAACCCAGATGTCCT
TCAACAGAGGAATGAATACAAAAAATTTGGTTCATTTGAACAAAGGAGTA
CTACTCAGCTTTTAAAAACAATGACTTTATGAAATTCTGAGGCAAATGGG
TGGAACTAGAAAATATCATCCTGAGTGAGGTAAACCCAGTCTCAAAAGAC
ACACATGGTATATGCACTTACTGGGGAGTGATATTAGCTCCAAATCTCCG
AAAACCCAGATAAAATTCCAGATCCTTGAGGTCCCGAAAAGGAAGAACAC
AGGGGGGGGGTTCCGGCCCCCAAAGGGGAAAAAATAAGGGGGGAATATGA
GGATAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_g09.b1 MSMg01no354_g09.b1 CHROMAT_FILE:
MSMg01no354_g09.b1 PHD_FILE: MSMg01no354_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:32 2005
         (638 letters)



>mm_chr19_34008479_34009516
          Length = 1038

 Score = 1210 bits (626), Expect = 0.0
 Identities = 632/634 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcttatatcttattctccaatagaacaagcaccttttaaattgtaaactatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gaattcttcttatatcttattctccaatagaacaagcaccttttaaattgtaaactatct 779

                                                                       
Query: 65  caacaattatgttatcatcctagaaaatttttgatatatctgtctctcacatggcatact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 caacaattatgttatcatcctagaaaatttttgatatatctgtctctcacatggcatact 719

                                                                       
Query: 125 ggaaaccaaaatggaaatcgcatgtttaacttctaatctccttatattcctaagaggttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggaaaccaaaatggaaatcgcatgtttaacttctaatctccttatattcctaagaggttc 659

                                                                       
Query: 185 ccaggcattcacactggactttggtttaggtttgaaaatctggttctagatgccacttgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ccaggcattcacactggactttggtttaggtttgaaaatctggttctagatgccacttgc 599

                                                                       
Query: 245 tctgctggttattttgggatatcaagaaacagagaaaagggagcagggagagcgtaaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 598 tctgctggttattttgggatatcaagaaacagagaaaagggagcagggagagcgtaaaga 539

                                                                       
Query: 305 ggagtaagaagaaagagagggagaaagaggaggggtacctccaagtacccaaccaggcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 538 ggagtaagaagaaagagagggagaaagaggaggggtacctccaagtacccaaccatgcat 479

                                                                       
Query: 365 gcctagggtggcaaggctccataaacccccaaatccacagtcttctagtgtacagtgttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gcctagggtggcaaggctccataaacccccaaatccacagtcttctagtgtacagtgttc 419

                                                                       
Query: 425 aaacccaagaacctatgaaagttatctcactcacaatctatttgaacatcacatcatgta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aaacccaagaacctatgaaagttatctcactcacaatctatttgaacatcacatcatgta 359

                                                                       
Query: 485 gcctatcttctaggaggctcaatatcctggcttgtgacttctatatagcaaaagtttgag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcctatcttctaggaggctcaatatcctggcttgtgacttctatatagcaaaagtttgag 299

                                                                       
Query: 545 ttccttttcaaataccaagttgacaagagattatatttaacttacttgtggatcttgcta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttccttttcaaataccaagttgacaagagattatatttaacttacttgtggatcttgcta 239

                                             
Query: 605 tatggttaacggataccatgatctaggctgatta 638
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 tatggttaacggataccatgatctaggctgatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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