Query= MSMg01no354_p13.b1 MSMg01no354_p13.b1 CHROMAT_FILE:
MSMg01no354_p13.b1 PHD_FILE: MSMg01no354_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:17 2005
(303 letters)
>mm_chr19_18911721_18912423
Length = 703
Score = 571 bits (295), Expect = e-167
Identities = 301/303 (99%)
Strand = Plus / Minus
Query: 1 cagtagaaccttgaatgacaaagccacagaaccaatgtgctcacttagaaatctgtatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cagtagaaccttgaatgacaaagccacagaaccaatgtgctcacttagaaatctgtatat 343
Query: 61 ttattaaattttggttttccaaagacctctgttagctagacactgtagcaataacagagg 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttattaaactttggttttccaaagacctctgttagctagacactgtagcaataacagagg 283
Query: 121 aggtcaagatgtctttacatgtattatatgtggtgaaattgtgagaaatcactttttacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aggtcaagatgtctttacatgtattatatgtggtgaaattgtgagaaatcactttttacc 223
Query: 181 tttgtttaattagaaaatggagggagctggagttagagtttagtctataaatcacttgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tttgtttaattagaaaatggagggagctggagttagagtttagtctataaatcacttgcc 163
Query: 241 atgcaagcacggagactggagcttgacttccagaacgcacataaaatgatttgatgtggt 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 162 atgcaagcacggagactggagcttgacttccagaacccacataaaatgatttgatgtggt 103
Query: 301 gtg 303
|||
Sbjct: 102 gtg 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space: 204036
Effective search space used: 204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_p13.g1 MSMg01no354_p13.g1 CHROMAT_FILE:
MSMg01no354_p13.g1 PHD_FILE: MSMg01no354_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:17 2005
(517 letters)
>mm_chr19_18712949_18713865
Length = 917
Score = 891 bits (461), Expect = 0.0
Identities = 500/519 (96%), Gaps = 12/519 (2%)
Strand = Plus / Plus
Query: 1 tttgcatgtgactgagctctgagctaatcacctcttccaaaaaaaaaaaaaaaaatgata 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 209 tttgcatgtgactgagctctgagctaatcacctcttccaaaaaaaaa--------tgata 260
Query: 61 gcataagccaggcacggtgactgatacctgtaacctcagtactcaggaggttctgaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gcataagccaggcacggtgactgatacctgtaacctcagtactcaggaggttccgaccaa 320
Query: 121 cggtctgctgtaagttcaagggcagcctgagctagctacccaagtgggtcaataagggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggtctgctgtaagttcaagggcagcctgagctagctacccaagtgggtcaataagggca 380
Query: 181 acatgactactgtttcagaagaaaaacccaaagagaaaagaaagattaactagagaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgactactgtttcagaagaaaaacccaaagagaaaagaaagattaactagagaaatg 440
Query: 241 cct--ccctccccccatgcaggagagccggaaacaggacacacaactctatcaggcacct 298
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctacccctcccc--atgcaggagagccggaaacaggacacacaactctatcaggcacct 498
Query: 299 gcatctccagatgtcaccagccagccagaggcaacaaacactgacctgagggcaacagta 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 499 gcatctccagatgtcaccggccagccagaggcaacaaacactgacctgagggcaagagta 558
Query: 359 acagtgggcctccacctgggcccagtcacagagagggggaggggaggaagaggcatggcc 418
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 559 acagtgggcctccacctgggcccagtcacagagagggggaggggagggagaggcatggcc 618
Query: 419 caggaaatgtgggttaatggacagccgggcttctaataagccattcctcctttttcctac 478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caggaaatgtgggttcatggacagccgggcttctaataagccattcctcctttttcctac 678
Query: 479 gtagttgatacaatcactgtggctgtgggcagttctaga 517
|| ||||| ||||||||||||||||||||||||||||||
Sbjct: 679 gtggttgaaacaatcactgtggctgtgggcagttctaga 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
