Query= MSMg01no355_e20.b1 MSMg01no355_e20.b1 CHROMAT_FILE:
MSMg01no355_e20.b1 PHD_FILE: MSMg01no355_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:43 2005
(548 letters)
>mm_chr19_22687228_22688175
Length = 948
Score = 882 bits (456), Expect = 0.0
Identities = 489/500 (97%), Gaps = 1/500 (0%)
Strand = Plus / Minus
Query: 50 aataatttctaggcttccca-tttcttcttttcctttgccaagtagaatttctttcatta 108
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 948 aataatttctaggcttcccatttttttcttttcctttgccaagtagaatttctttcatta 889
Query: 109 aaagtactaggttgactctcccacaccccaaaaaagtggttagaaacgggcctggagaga 168
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 888 aaagtactaggttgactctcccacaccccaaaaaagtggttagaaacggacctggagaga 829
Query: 169 tgtattggcagattagagcacgaggattggaggtcagtttccagtacctacagggtgggt 228
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 828 tgtattggcagattagagcactaggattggaggtcagtttccagtacctacaggatgggt 769
Query: 229 cacagccacctctaaccccatagaaaccatacacctggtatatatgcataaaggtaagca 288
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 768 cacagccacctctaaccccatagaaaccatacatgtggtatatatgcatacaggtaagca 709
Query: 289 agcattcatatatgtaaaaatactttttaaagtggtttcatagaagcaggtagtaaatgt 348
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 708 agcattcatatacgtaaaaatactttttaaagtggtttcatagaagcaggtagtgaatgt 649
Query: 349 ggaagtaggtttaggttctaatttgtatgttagcttccattcacagcagggcataaacta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggaagtaggtttaggttctaatttgtatgttagcttccattcacagcagggcataaacta 589
Query: 409 acatctctgggcaaaattttaatctactattaacccatgagacttatgtatgacttttta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 acatctctgggcaaaattttaatctactattaacccatgagacttatgtatgacttttta 529
Query: 469 attcaacattttgggggtctaaatgatatgagatttcactaaaaattccaaatatgatga 528
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 528 attcaacattttgggggtctaaatgatatgagatttcgctaaaaattccaaatatgatga 469
Query: 529 tgttttcaaataatgaactt 548
||||||||||||||||||||
Sbjct: 468 tgttttcaaataatgaactt 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_e20.g1 MSMg01no355_e20.g1 CHROMAT_FILE:
MSMg01no355_e20.g1 PHD_FILE: MSMg01no355_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:43 2005
(360 letters)
>mm_chr19_22469062_22469821
Length = 760
Score = 665 bits (344), Expect = 0.0
Identities = 356/360 (98%)
Strand = Plus / Plus
Query: 1 tcccccttcactgtgtgatataaaatctattatattctgctgggagggggggacagtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccccttcactgtgtgatataaaatctattatattctgctgggagggggggacagtttc 260
Query: 61 aaaatggcagttgagctgagctgtttcctacagtgatgagcacggagtctcaggagcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatggcagttgagctgagctgtttcctacagtgatgagcacggagtctcaggagcatc 320
Query: 121 aaggccatgtggcagattgttcagctgttgtcaagagagctgccaaaattgcttctgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggccatgtggcagattgttcagctgttgtcaagagagctgccaaaattgcttctgatt 380
Query: 181 ttaggagacagatttgattagagaagtctcattatgattttaaaatctggttttgcagac 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggagacagatttgattagagaagtctcattatgattttaaaatctggttttgcagac 440
Query: 241 tatttatagaaaaaaaatatttctcaaatggaaaattctcccaaaggaactcttaatacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 tatttatagaaaaaaaatatttctcaaatggaaaattctcccaaaggaactcttaatccc 500
Query: 301 ctgtttgcctcatatggaactaaactgcttttaggtccctgacagtcagaagcccctagt 360
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 501 ctgtttgcctcatatggaactaaactgcttttaggcccctgacagtcggaagcccctagt 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space: 263601
Effective search space used: 263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
