Query= MSMg01no356_n06.b1 MSMg01no356_n06.b1 CHROMAT_FILE:
MSMg01no356_n06.b1 PHD_FILE: MSMg01no356_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:40 2005
(551 letters)
>mm_chr19_16872582_16873534
Length = 953
Score = 1007 bits (521), Expect = 0.0
Identities = 543/551 (98%), Gaps = 4/551 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttctttgatctgttatcagtgccttatctggggttaaaaaaaaaaagatttg 63
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||
Sbjct: 204 ggaattctttctttgatctgttatcagtgccttatctgggattaaaaagaaaa-gatttg 262
Query: 64 ttgctaactctttaggaaaattcacacaaaa-ttgcctcttaaatttccttccaagtaaa 122
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 tcgctaactctttaggaaaattcacacaaaaattgcctcttaaatttccttccaagtaaa 322
Query: 123 tacttgatgtactgtggacactttttaattcttattagggaagcagagcactaggataat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tacttgatgtactgtggacactttttaattcttattagggaagcagagcactaggataat 382
Query: 183 gcaaatagaagtgtttcacgtgttttgttttttccctcttcatcttattcctgccagcct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcaaatagaagtgtttcacgtgttttgttttttccctcttcatcttattcctgccagcct 442
Query: 243 gctgtcctgggtcttacattacttgcttcttgtttattttcttctctttttcttcctctt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctgtcctgggtcttacattacttgcttcttgtttattttcttctctttttcttcctctt 502
Query: 303 tgctattttttttcttgttttctgttttcagcatgctgggacatacctgtaattctggca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgctattttttttcttgttttctgttttcagcatgctgggacatacctgtaattctggca 562
Query: 363 cttgggagggtgaggcaggaggttcatgtgtttgaaaccagctgggttacatgataagac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cttgggagggtgaggcaggaggttcatgtgtttgaaaccagctgggttacatgataagac 622
Query: 423 tttatctctatttttgaaaaaaaaaa--ccaaacaaaacaagtgtgcattaaatatacac 480
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 623 tttatctctatttttgaaaaaaaaaaaaccaaacaaaacaagtgtgcattaaatatacac 682
Query: 481 agggtgcttctaagatttacacacatgcatgtaaagtactttgactacattcaccccatt 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 683 agggtgcttctaagatttacacacatgtatgtaaagtactttgactacattcaccccatt 742
Query: 541 agcttctctgg 551
|||||||||||
Sbjct: 743 agcttctctgg 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 953
Length adjustment: 10
Effective length of query: 541
Effective length of database: 943
Effective search space: 510163
Effective search space used: 510163
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_n06.g1 MSMg01no356_n06.g1 CHROMAT_FILE:
MSMg01no356_n06.g1 PHD_FILE: MSMg01no356_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:40 2005
(438 letters)
>mm_chr19_17019435_17020272
Length = 838
Score = 801 bits (414), Expect = 0.0
Identities = 432/438 (98%)
Strand = Plus / Minus
Query: 1 tcatttcgttactgagtcttctttatgatcgtttttcagactggatagcaacaccctaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tcatttcgttactgagtcttctttatgatcgtttttcagactggatagcaacaccctaca 579
Query: 61 actaggtttcacagtggccaagcactcagtccttgcttggtatggtaactaactgttaac 120
|||||||| ||||||| |||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 578 actaggttacacagtgaccaagcactcaggacttgcttggtatggtaactaactgctaac 519
Query: 121 cggtatgcttagtaaagaacttctccaaggtcaaggagagcctcctgggggcataaatgg 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cggtatgctcagtaaagaacttctccaaggtcaaggagagcctcctgggggcataaatgg 459
Query: 181 atgatcatggaacctgcaagattctgatcaccttttctcttctcctagtgttcccaaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atgatcatggaacctgcaagattctgatcaccttttctcttctcctagtgttcccaaatt 399
Query: 241 taatgttccttgtacatcaacaacgtgtgccaaaacaattattttaaaggattttctaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 taatgttccttgtacatcaacaacgtgtgccaaaacaattattttaaaggattttctaaa 339
Query: 301 tagcaattctccaaagtgcaagttgtctggaattatcacataactgtgccaagtctctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tagcaattctccaaagtgcaagttgtctggaattatcacataactgtgccaagtctctgt 279
Query: 361 aaaactcagttgcccttaatggaccacactgacccatgagtaccaaaaataccagccaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaaactcagttgcccttaatggaccacactgacccatgagtaccaaaaataccagccaaa 219
Query: 421 atagaaactgttttcaac 438
||||||||||||||||||
Sbjct: 218 atagaaactgttttcaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
