BAC Information

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BAC

Clone NameMSMg01-357E15
Chromosome19 (Build37)
Map Location 21,115,224 - 21,115,649
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
Downstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357E15.T7 (MSMg01no357_e15.b1)MSMg01-357E15.TJ (MSMg01no357_e15.g1)
ACCAG467227AG467228
length753784
length of high quality
(start - end)
507 (66 - 572)426 (72 - 497)
definitionCHROMAT_FILE: MSMg01no357_e15.b1 PHD_FILE: MSMg01no357_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:14 2005CHROMAT_FILE: MSMg01no357_e15.g1 PHD_FILE: MSMg01no357_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AGAGATTCCTAAAGACAGACTTTAAAAACCTATACCCCTTGCATTTGGAG
CATAGATATTCGGAATTGAAAGTTCATCTTCGTAGATTTTTCCTTTCACG
AGTATGAAGTGTCCTTTCTTATCTTTTTTGATGACTTTTGGTTGAAAGTC
AATTTTATTAGATATTAGAGTGGCTACTCCAGTTTGTTTCTTGGGACCAT
TTGCTTGGAATTTTTTTTCCAGCCTTTTACTGAAGTAGTGTCTGTCTTTA
TCACCGAGGTGCGATTCCTGTATGCAGCAAAATGCTGGGTCCTGTTTACT
TATCCAGTCTGTTAATCTATGTCTTTTTATTGGGGAATTGAGTTCATTTT
GATGTTAAGAGAGATTAAGGAAAAGTGATTGCTGCTTCCTGTTATTTTTG
TTATTAGAGGTTGAATTATGTTTGTGTGGTTATGTTTCTTTGGGTTTGTT
GAAAGAAGATTATGTTCTTGCTTTTTCTAGAGAGTAGTTTCCCTCCTTGT
GTTGGTGGTTTCCATCTATTATCTTTTGTAGGATTGGATTTGTGGAAAGA
TATTGTGCAAATTTTGTTTTGTCCTGGAAATCTTTGTTTCTCCATCTATG
GTAATCTCCACTCTTAAAGCTTACATCAATAACTCTTGCTAAATCCCATG
CTGTTAACTTTCGCATAAAAACATAATCCTCCTCTTTTCTTTTTCATAGC
TTC
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTCACTTTGAATTTTCTGGTTCAATTT
AGACTTCAAAGTAGGCTGGACGTGACCTGAAAGACTTTATCAAGAATCAG
ATGCAGCAGGGGCTGGGCTAGAATGGAGAAGCTCTGCCTCTCCTGACTGG
GAGAGCAGGATTGCTCACTGTCCCGAGTGTTCCTGTCTTCCAAGCACTGT
CTGTTAGGGCTGCAGTAAAGGCCTATTCCAGGAAAAGTAGTCTGCTCTAG
AGAATAGAGCCTCTGGCATGGGCGGAGACCTAACTTTCTTTCCAACTGGA
GAGGGTCAAGGACAAGGTTAAGGGTCTGTCCCTGAGAGGCAGGTCTTTAA
GCCAAGTGACAGAGGTAAGAAGAAAAATTTTCCAGTTAATAAAATTTTGT
ATGCCTCCTTCCCAGAATTCTTGATCCCCAGTGCAGTCCCTGCCCTGGCA
GCAGCCATGCTGTTTGCCTGGGTCTGTCCACCTTTCTCAGGCCCACTCTT
CCCCCCTTCTTCTCTCCCTCCTCCTCCTCTTTCTGTTCCTTTCTTTGGAG
GCTGGACGGAAACCAAAAAAAAAAAAATTGCTTGTTTTTTTATTTTGGGG
GGGCCTGCCCACTTTTTTGAAGCCCTTTTTCCGGGATGGGGGGAGAAGCC
CCCCCCCGTTCTCAATGGCACGGGATTTTGGACTGGTTGTTCCACTTTCT
TTTACACTCCTTTTTTTTTTCTCATTACTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_e15.g1 MSMg01no357_e15.g1 CHROMAT_FILE:
MSMg01no357_e15.g1 PHD_FILE: MSMg01no357_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:14 2005
         (426 letters)



>mm_chr19_21115024_21115849
          Length = 826

 Score =  785 bits (406), Expect = 0.0
 Identities = 421/426 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcactttgaattttctggttcaatttagacttcaaagtaggctggacgtgacctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atttcactttgaattttctggttcaatttagacttcaaagtaggctggacgtgacctgaa 567

                                                                       
Query: 61  agactttatcaagaatcagatgcagcaggggctgggctagaatggagaagctctgcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agactttatcaagaatcagatgcagcaggggctgggctagaatggagaagctctgcctct 507

                                                                       
Query: 121 cctgactgggagagcaggattgctcactgtcccgagtgttcctgtcttccaagcactgtc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 506 cctgactgggagagcaggattgctcactgtcccgagtgttcttgtcttccaagcactgtc 447

                                                                       
Query: 181 tgttagggctgcagtaaaggcctattccaggaaaagtagtctgctctagagaatagagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgttagggctgcagtaaaggcctattccaggaaaagtagtctgctctagagaatagagcc 387

                                                                       
Query: 241 tctggcatgggcggagacctaactttctttccaactggagagggtcaaggacaaggttaa 300
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tctggcatgggtggagacataactttctttccaactggagagggtcaaggacaaggttaa 327

                                                                       
Query: 301 gggtctgtccctgagaggcaggtctttaagccaagtgacagaggtaagaagaaaaatttt 360
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 326 gggtctgtccctgagaggcaggtctttaagccaagagacagaggtaagaagaaaaagttt 267

                                                                       
Query: 361 ccagttaataaaattttgtatgcctccttcccagaattcttgatccccagtgcagtccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccagttaataaaattttgtatgcctccttcccagaattcttgatccccagtgcagtccct 207

                 
Query: 421 gccctg 426
           ||||||
Sbjct: 206 gccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)