Query= MSMg01no357_l16.b1 MSMg01no357_l16.b1 CHROMAT_FILE:
MSMg01no357_l16.b1 PHD_FILE: MSMg01no357_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:48 2005
(499 letters)
>mm_chr19_38795690_38796588
Length = 899
Score = 905 bits (468), Expect = 0.0
Identities = 489/496 (98%), Gaps = 2/496 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaagataatttctttatcttggtaagatatgaaacccaagaggtatttctaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaagataatttctttatcttggtaagatatgaaacccaagaggtatttctaca 264
Query: 65 agcgcactctacttgaaagaaaatggtcattggcttgccaatcttgctagataatattag 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgcactctacttgaaagaaaatggtcattggcttgccaatcttgctagataatattag 324
Query: 125 ctatacagaatacaactgactggatgttagtgcttttaaaaatgccatggccacatccat 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctatatagaatacaactgactggatgttagtgcttttaaaaatgccatggccacatccat 384
Query: 185 gaccaagacatttatatattctttgctgaggtcttgggcatctgtgtgctttttttaagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 gaccaagacatttatatattctttgctgaggtcttgggcatctgtgtgctttttt-aagc 443
Query: 245 tcccagacaatgctagcttgtagccagctgacacccaccagactggcccatttatctagg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 444 tcccagacaatgctagcttgtagccagctgacacccaccagactggcccattcatctcgg 503
Query: 305 tatttgttccttacacaagaatcatttgtgtagattgttttgatgatacttaagggaaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatttgttccttacacaagaatcatttgtgtagattgttttgatgatacttaagggaaag 563
Query: 365 caggagcgaagtcatcacttctttttttttcccc-tttgatccctgcagaggccaatgtc 423
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 564 caggagcgaagtcatcacttctttttttttccccctttgatccctgcagaggccaatgtc 623
Query: 424 atcactaaccctcccaaccccctacattccagaagagcctactctttgaccacggctggg 483
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 624 atcactaaccctcccaaccccctccattccagaagagcctactctttgaccacggctggg 683
Query: 484 tcccccaacttggcta 499
||||||||||||||||
Sbjct: 684 tcccccaacttggcta 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_l16.g1 MSMg01no357_l16.g1 CHROMAT_FILE:
MSMg01no357_l16.g1 PHD_FILE: MSMg01no357_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:48 2005
(462 letters)
>mm_chr19_38972077_38972941
Length = 865
Score = 884 bits (457), Expect = 0.0
Identities = 462/465 (99%), Gaps = 3/465 (0%)
Strand = Plus / Minus
Query: 1 aatctgtacaccaggttgtcctcacacatacttcctcat---cctcctaccactgcctcc 57
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 aatctgtacaccaggttgtcctcacacatacttcctcatccgcctcctaccactgcctcc 606
Query: 58 tagggctgggagtgcgggtgtgcaccaccatgcctggctgcttatattacacagttgttt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tagggctgggagtgcgggtgtgcaccaccatgcctggctgcttatattacacagttgttt 546
Query: 118 acttcatctataaaataaaatctgttgatgaaataattacaataaaaactgcaggcaatt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 acttcatctataaaataaaatctgttgatgaaataattacaataaaaactgcaggcaatt 486
Query: 178 aaccaagggccacttttcatacaatggattattaatctcaacataaacaatatattttaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaccaagggccacttttcatacaatggattattaatctcaacataaacaatatattttaa 426
Query: 238 atgatgttgccaatgacactattattatataaacaccttttagtatggtgttttatttta 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atgatgttgccaatgacactattattatataaacaccttttagtatggtgttttatttta 366
Query: 298 ctaattaggtcaaaataaaatgttctcaacaaacaaaaatgacatacctctgaatttaga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctaattaggtcaaaataaaatgttctcaacaaacaaaaatgacatacctctgaatttaga 306
Query: 358 ggtcacaattttggaacaaaagctgcctcaaacataaagaaaagtgggatctttctcaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggtcacaattttggaacaaaagctgcctcaaacataaagaaaagtgggatctttctcaaa 246
Query: 418 agttataaaaccagatgatggtaacacacatctttaatcgcagca 462
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agttataaaaccagatgatggtaacacacatctttaatcgcagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 865
Length adjustment: 10
Effective length of query: 452
Effective length of database: 855
Effective search space: 386460
Effective search space used: 386460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
