XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAG
GAAATTCAGACCTTGGCCAGAGTGGCAAATTCTTCTTGACCATGACAGGA
AGATTGGACTTAAAGTTGTTCACTAGGGTTTCGCAGCCTGACTCATTTTC
TTTCCAACTCTTAACTAGTGTGAAGGAAACCGTAAGACACAGTAAAGGAA
TAAGTAATTTCCTAGGTAAATCTCAAACCTGAAGCATTTTTAAGTTGGCA
ATTTGCAATTTCAAGAAGGTAACTACAGAATTAGGGAAACGTTTTTTCTC
ATCAGTTATATTCTTACTTAGAACGTGTAAAATTGATTTTAAAAGAGGGA
AATAGAGGAGTGGTTATTAAGGGTTTTACTGGACCAAATGAAAGTTTCAA
CTTTTCTTGGAGAAACATAAAGATACCCTAACTAGATTTTGTTTTTGTTT
TTGTTTTTATTGGCCCAGATGTTCATTTAAACCAGGGGCAGGAATTGAAC
TTGTGGGGAAATGGCAGATCTGCCTGGATTCTCACCGATACTCCAGGGCT
GCTTTGAGTGGACTTGAGTTGACTCTTAACAGTAAACAGGGGCTTGTATT
CATAGACATGCTTGAGAAGATTTGAGCTGAACACCTGCCCTAAAAAATCT
TCCCTGGTCCAGGAGGACTTTTTTACCACCTTTTTTGTTAGGTGGGCCAC
CATCCCAACTGGTTGGGTAAACATGAGAAGGAGAAAAAAATTTTGGTTCC
CACCGCCCTCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCACCCGAGGAATACCGAAAGGCTGAGAAACACCTGA
AAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACC
CTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGG
TTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCTGCAATACCTCT
CCTGAGCATATATACAGAAGATGTTCCAACCGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCAACAGAAGAATGGATACAAAAAATGTGGTACATTTA
CACAATGGAGTACTACTCAGCTTTACACAATGGAATACTACTCAGCTATT
AAAAAGAATGAATTTACGAAATTCCTAGGCAAATGGATGGACCTGGAGGG
CATCATGCTGAGTGAGGTAACCCCATCCCCAAAGAATTCCAAGAAATGGA
CTCCCTGATAAGGGGAAATAACCCCCAAAAACTTATTATAGTGGGAATAT
AAGGGACAAAATAGCTAACACACTGAACCTTGAGAAAAAAAGAAAAAACC
AAAGG

Query= MSMg01no358_h17.b1 MSMg01no358_h17.b1 CHROMAT_FILE:
MSMg01no358_h17.b1 PHD_FILE: MSMg01no358_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:45 2005
         (478 letters)



>mm_chr19_52956907_52957784
          Length = 878

 Score =  845 bits (437), Expect = 0.0
 Identities = 466/477 (97%), Gaps = 5/477 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacaggaaattc--agaccttggccagagtggcaaattcttcttgaccatgaca 62
           |||||||||||||||  |  |||| |||||||||||||||||||||||||||||||||||
Sbjct: 598 gaattccacaggaaa--caaagactttggccagagtggcaaattcttcttgaccatgaca 541

                                                                       
Query: 63  ggaagattggacttaaagttgttcactagggtttcgcagcctgactcattttctttccaa 122
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 540 ggaagattggacttaaagttgttcactagggtttcgcagcctgactcattttctctccaa 481

                                                                       
Query: 123 ctcttaactagtgtgaaggaaaccgtaagacacagtaaaggaataagtaatttcctaggt 182
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctcttaactagtgtgaaggaaactgtaagacacagtaaaggaataagtaatttcctaggt 421

                                                                       
Query: 183 aaatctcaaacctgaagcatttttaagttggcaatttgcaatttcaagaaggtaactaca 242
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aaatctcagacctgaagcatttttaagttggcaatttgcaatttcaagaaggtaactaca 361

                                                                       
Query: 243 gaattagggaaacgttttttctcatcagttatattcttacttagaacgtgtaaaattgat 302
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaattagggaaacgttttctctcatcagttatattcttacttagaacgtgtaaaattgat 301

                                                                       
Query: 303 tttaaaagagggaaatagaggagtggttattaagggttttactggaccaaatgaaagttt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tttaaaagagggaaatagaggagtggttattaagggttttactggaccaaatgaaagttt 241

                                                                       
Query: 363 caacttttcttggagaaacataaagataccctaactagattttgttttt-gtttttgttt 421
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 240 caacttttcttggagaaacataaagataccctaactggattttgttttttgtttttgttt 181

                                                                    
Query: 422 ttattggcccagatgttcatttaaaccaggggcaggaattgaacttgtggggaaatg 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ttattggcccagatgttcatttaaaccaggggcaggaattgaacttgtggggaaatg 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)