BAC Information

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BAC

Clone NameMSMg01-358N09
Chromosome19 (Build37)
Map Location 29,976,126 - 29,976,451
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc1a1, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6
Downstream geneIl33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358N09.T7 (MSMg01no358_n09.b1)MSMg01-358N09.TJ (MSMg01no358_n09.g1)
ACCAG468396AG468397
length742727
length of high quality
(start - end)		498 (31 - 528)505 (62 - 566)
definitionCHROMAT_FILE: MSMg01no358_n09.b1 PHD_FILE: MSMg01no358_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:12 2005CHROMAT_FILE: MSMg01no358_n09.g1 PHD_FILE: MSMg01no358_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCCTATAGTGAGAGGATCCGCGGAATTCTCAGCTCT
TCCTGTACCATGCCTGCCTGGATACCGCCATGCTCACACCTTGATGATAA
TGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTTGTT
GTTTTTTTTTTTAATAAGACTTGCCTTGGTCATGGTATCTGTTCACAGCA
GTAAAACCCTAACTAAGACACCTATCAACAAATGGGGAACAGAGCTAAAC
AGAGAATTCTCAACTGAGGAAACCTGAATGACTGAGAAGCACCTAAAGAA
ATGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAACGACCCTGA
GATTCCACCTTAAACTAGTCAGGATGGCTAAGATTAAAACCTCAGGTAAC
AACACATGTTGGAGAGGATGTGGAGAAAGACGAATACTCCTCCACTGCTG
GTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTATTGTGGTTCC
TCAGAAAACTGGGCATAGTACTACCTGAGGACCTAGCTATACCACTCCTG
GGCATATACCCAGAATATGCTCCAACATGCAGTAAAGACACATGCTCCAT
TATGTTCATAGCAGCCATATTTATTATAACCCCAAGCTAGAAACAACCCC
GATATCCCTCCCCCGAAGGATAAAATACCGAAAAGGGGGGAATATTTACC
CAATGGGAAAATACTTATCTTTTTAAAAACAAGGACTTCTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTACAACAGTGCCTGAACCTGGTTTTTGGGGGGTAAAGA
GGGCCCAGGTTGTTACTCTTGTAACTTTCATTTTAAAAAGGGGATATGGT
GGGCCTCAGTTTCAAACCATCCTTTCTCCTTACTCAGTGTATTAGTCTGG
GTTTTCTAGAGTCACAGAACTTTTGGAATGTCTTTATGTATATGGAGGGA
ATTTATTATGATGACTTATAGTCTGTAGTCCAACTACCTGAACGATGGTC
ATCTGTGAATGAGAAGTCCAAGAATCTAGTAGTTGCTAAGTCCCACGAGG
CTAGTTGTTTCAGCTGGTCTTCTGTAGAAGTAGATGTGCCTGCAAGTAAA
TACAAGCAGGCAAAGAAAATCAAATCTTCCTTCTTCCAATGTCCTTATGT
AGGTCTCCAGCAGATGGTGTGGCCCAGATTAAAGGTGTGTGCCACCATGC
CTGGATCTGGGACTTATTTTGTCCCAAGATGACCTTGAACTCAGAGATCT
CCTTTCCTCAGTTTCCTGGGATTAAAGGCATGAACTACCTTGTCTGGGCC
TAAGCTTTTTCTATCCTTTATGGTTCAAGATCTCCCTGCTAAAATTCAGG
TTAAAAACTTTTGTCTTCCAGCCTCAGGGTTTTGAATATTATGGAATTCT
CCTAATCTTGGATTGGGATTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_n09.g1 MSMg01no358_n09.g1 CHROMAT_FILE:
MSMg01no358_n09.g1 PHD_FILE: MSMg01no358_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:12 2005
         (505 letters)



>mm_chr19_29976124_29977030
          Length = 907

 Score =  549 bits (284), Expect = e-160
 Identities = 315/326 (96%), Gaps = 2/326 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacaacagtgcctgaacctgg--tttttggggggtaaagagggcccaggttgttactct 58
           ||||||||||| ||||| ||||  ||||||| ||||||||||||||||||||||||||||
Sbjct: 328 ttacaacagtggctgaatctggtttttttggagggtaaagagggcccaggttgttactct 269

                                                                       
Query: 59  tgtaactttcattttaaaaaggggatatggtgggcctcagtttcaaaccatcctttctcc 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgtaactttcattttaaaaaggggatatggtgggcctcagtttcaaaccatcctttctcc 209

                                                                       
Query: 119 ttactcagtgtattagtctgggttttctagagtcacagaacttttggaatgtctttatgt 178
           |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 208 ttactcagtgtattagtctgggttctctagagtcacagaacttatggaatgtctttatgt 149

                                                                       
Query: 179 atatggagggaatttattatgatgacttatagtctgtagtccaactacctgaacgatggt 238
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 148 atatggagggaatttattatgatgacttatagtctgtagtctaactacctgaatgatggt 89

                                                                       
Query: 239 catctgtgaatgagaagtccaagaatctagtagttgctaagtcccacgaggctagttgtt 298
           || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 88  cagctgtgaatgagaagtccaagaatctagtagttgctcagtcccacgaggctagttgtt 29

                                     
Query: 299 tcagctggtcttctgtagaagtagat 324
           ||||||||||||||||||||||||||
Sbjct: 28  tcagctggtcttctgtagaagtagat 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 907
Length adjustment: 10
Effective length of query: 495
Effective length of database: 897
Effective search space:   444015
Effective search space used:   444015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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