Query= MSMg01no360_d19.b1 MSMg01no360_d19.b1 CHROMAT_FILE:
MSMg01no360_d19.b1 PHD_FILE: MSMg01no360_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:56 2005
(504 letters)
>mm_chr19_48495716_48496618
Length = 903
Score = 944 bits (488), Expect = 0.0
Identities = 500/504 (99%), Gaps = 1/504 (0%)
Strand = Plus / Minus
Query: 1 taagtatattctttaagaaatgagttacataatttttctttcagaaatatctaccatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 taagtatattctttaagaaatgagttacataatttttctttcagaaatatctaccatttt 531
Query: 61 acacacggtcatccccctacttttcaccataatcatgtaatttctgttacataactcctt 120
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 acacatggacatccccctacttttcaccataatcatgtaatttctgttacataactcctt 471
Query: 121 tccttccttgcattaatcactgttcatttctttttgcttgggagaaataactgaataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tccttccttgcattaatcactgttcatttctttttgcttgggagaaataactgaataaaa 411
Query: 181 attaagccaaatcttagttcctttcttccacagaaaccactctattcatgtccccatccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 attaagccaaatcttagttcctttcttccacagaaaccactctattcatgtccccatccc 351
Query: 241 ctctttgatgtcttcttttctcttaggctcacttttctaggctctgtcctgagtatgtcc 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 350 ctctttgatgtcttcttttctcttaggctcacttttctagactctgtcctgagtatgtcc 291
Query: 301 tgccctcttaccgccttgccaagtgtcaatcataatttaaatgaggtgtcatcaagaata 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgccctcttacc-ccttgccaagtgtcaatcataatttaaatgaggtgtcatcaagaata 232
Query: 361 tgatgtacatgcaaacgatctaagactagtccccatcccatggtcaagaaccaatccctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tgatgtacatgcaaacgatctaagactagtccccatcccatggtcaagaaccaatccctg 172
Query: 421 acactattcacaatactccattatgttttcagacaggagcctagcataactatactctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 acactattcacaatactccattatgttttcagacaggagcctagcataactatactctga 112
Query: 481 gggctccaaccagagtggaaagag 504
||||||||||||||||||||||||
Sbjct: 111 gggctccaaccagagtggaaagag 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space: 441142
Effective search space used: 441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_d19.g1 MSMg01no360_d19.g1 CHROMAT_FILE:
MSMg01no360_d19.g1 PHD_FILE: MSMg01no360_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:56 2005
(455 letters)
>mm_chr19_48259711_48260565
Length = 855
Score = 841 bits (435), Expect = 0.0
Identities = 450/455 (98%)
Strand = Plus / Plus
Query: 1 caggaacagtagagcctgacagacagatcaccctatgctgagagcaccccccaagcagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaacagtagagcctgacagacagatcaccctatgctgagagcaccccccaagcagga 260
Query: 61 gccattgtcttatgggaactaatcattccttcaagtgatacatactccttcagggtcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccattgtcttatgggaactaatcattccttcaagtgatacatactccttcagggtcagc 320
Query: 121 ctgcaaacttggactgatattataatcatcagagtttgacaggattgcttgatcatgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcaaacttggactgatattataatcatcagagtttgacaggattgcttgatcatgcat 380
Query: 181 acttccttctcctctccccaattctgcatcttcttaagccctgccaacatcccaccacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttccttctcctctccccaattctgcatcttcttaagccctgccaacatcccaccacct 440
Query: 241 gatgaaaactctttcttctttacaccatgactccgctagctttcttttgaattttctttt 300
|||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||
Sbjct: 441 gatgaaaactctttcttctttacaccatgactccactagctttcttttggatttactttt 500
Query: 301 tctgatgtggccacattcaacatattggaaggtctaggagtcaggtctctggaccaacac 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgatgtggccacactcaacatattggaaggtctaggagtcaggtctctggaccaacac 560
Query: 361 tctgggtacagttacacattcaagaaacctcagtgcaaacctctggcaaaataaattcat 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tctgggtacagttacacattcaagaaacctcagtgcaaagctctggcaaaataaattcat 620
Query: 421 agggatctacaacaggtctcagcacaatcaagtct 455
|||||||||||||||||||||||||||||||||||
Sbjct: 621 agggatctacaacaggtctcagcacaatcaagtct 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
