BAC Information

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BAC

Clone NameMSMg01-360H09
Chromosome19 (Build37)
Map Location 13,791,908 - 13,792,283
singlet/doubletsinglet
Overlap genenone
Upstream geneKeg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491
Downstream geneOlfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360H09.T7 (MSMg01no360_h09.b1)MSMg01-360H09.TJ (MSMg01no360_h09.g1)
ACCAG469630AG469631
length760784
length of high quality
(start - end)
380 (72 - 451)457 (71 - 527)
definitionCHROMAT_FILE: MSMg01no360_h09.b1 PHD_FILE: MSMg01no360_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:13 2005CHROMAT_FILE: MSMg01no360_h09.g1 PHD_FILE: MSMg01no360_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXGGCCTCCAGGCAGGAATGGGTGGGTGGGTGGGTAGGGGCACACC
CTCATAGAAGCAGGAAGAGCAGGGATGGAATCAGTATTTTCTGGGGTGGG
GAATGGGGAAAGGATATAATATTTGAAATGTAAATAAATAAAATATCCAA
TAACAAAGGGAAAAAAGATGATAATTTGATGGAAGGGTGAGAAGCACTAT
TTAGTGCCATAGATTTTGGGTTAACCCAGGCAAGAGATGATGAGGATGAG
AAATAATGGAAGTGATGTGTTTATGAGGGAGGAAAGGCAGAATCCTAAAA
TAGTCAGATTCATGGTAGGAAAAAGACCACATATTAGGTAGGCATAGGAG
TTTTGGTTGTCTGACATTCAGGGATCATATAGCTATTTTACAATGCATAT
GGGTTTACATGCACATTGTCTCTGCTCACCTCCTCCTCATTATGCTAAGG
TAACTATCACAGAAATCTCTTGATCAAGACCAAGGATCTATTGTTTTTGA
AATCTTCTGTCTACAACTTGTTTATTTTTCCCAATGTTCCCTGTTGTACA
TCGCATCCTTTTATTGCTTCAATAGTGCTTTTAACAACTTTTCTTGTTCT
TTTATCTTTTTTTTGCCCTCCATAACGTATAATATGATTTTATTTAACTA
TTCGAATACTCCTTTTAAAATTCGTCCAATCACACTCTTTACGTTACACC
TCTTTTATTT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTTCTTGTGGCAGTCTTCTTTTAGGTTCG
GTGAAGGATTACTTTCTGGCTTTTTCTAGGGCATAATTTCCGTCCTCATA
TTTGTGTGTTCCCATTATTATCCTTTGTAGGGCTGGATTCATGGAAAGAT
ATTGTGTGAATTTGGTTTTGCATGGAATACTTTGGTTTTTCTGTCTGTGG
TAATTGAGAGTTTTGCTGGGTATAGTAGCCTGGGCTGGCATTTGTGTTCT
CTTAGGGTCTGTATAACATCTGTCCAGGATATTCTGTCTTTCATAGTCTC
TGGAGATAAGTCTGGTGTAATTCTAATAGGTCTGCCTTTATATGTTACTT
GACCTTTTTTCCTTACTGCTTTTAGTATTCTATTGTTATTTTGTGCATTT
GTTGTTCTGATTATTATGTGTCAGGAGAAATTTCTTTTCTGGCCCAGTGT
ATTTGGAGCTCTGTAGGCTTCTTATATGTTCACGGGCATCTCTTTCTTTA
TGTTAGGGAAGTTCTCTTCTATAATTTTTGTTGAAGAAATTTAACTGGGC
CTTTTAAGTTGAAAAAATCCTTTGTTCCCATCTTATACCTATTAAAAGGT
ATTGGGCTTGGTCCTCTTCTTTGTGCCCTTGGGATTTTCCCGGATGGCTC
TTAGAATAACATTTTTCTCTTCCAATTCACCCTTTTTTTCTCGTTGGTTT
GCGTGTTCATGCCTTTTTTTCGGCACCCTCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_h09.b1 MSMg01no360_h09.b1 CHROMAT_FILE:
MSMg01no360_h09.b1 PHD_FILE: MSMg01no360_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:13 2005
         (380 letters)



>mm_chr19_13791709_13792487
          Length = 779

 Score =  644 bits (333), Expect = 0.0
 Identities = 366/377 (97%), Gaps = 2/377 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggtgggtgggtgggtaggggcacaccctcatagaagcaggaagagcagggatggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atgggtgggtgggtgggtaggggcacaccctcatagaagcaggaagagcagggatggaat 259

                                                                       
Query: 61  cagtattttctggggtggggaatggggaaaggatataatatttgaaatgtaaataaataa 120
           ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 260 cagtattttctggcgtggggaatggggaaaggatataacatttgaaatgtaaataaataa 319

                                                                       
Query: 121 aatatccaataacaaaggg-aaaaaagatgataatttgatggaagggtgagaagcactat 179
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatatccaataacaaagggaaaaaaagatgataatttgatggaagggtgagaagcactat 379

                                                                       
Query: 180 ttagtgccatagattttgggttaacccaggcaagagatgatgaggatgagaaataatgga 239
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 ttagtgccatagattttgggttaacccaggcaagaaatgatgaggatgagaaataatgga 439

                                                                       
Query: 240 agtgatgtgtttatgagggaggaaaggcagaatcctaaaatagtcagattcatggtagga 299
           |||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 agtgatgtgactatgagggaggaaaggcagaatcctaaaatagccagattcatggtagga 499

                                                                       
Query: 300 aaaagaccacatattaggtaggcataggagttttggttgtctgacattcagggatcatat 359
           ||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 500 aaaagaccacatattagataagcataggagttttggttttctgacattc-gggatcatat 558

                            
Query: 360 agctattttacaatgca 376
           |||||||||||||||||
Sbjct: 559 agctattttacaatgca 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 779
Length adjustment: 9
Effective length of query: 371
Effective length of database: 770
Effective search space:   285670
Effective search space used:   285670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)