Query= MSMg01no360_j04.b1 MSMg01no360_j04.b1 CHROMAT_FILE:
MSMg01no360_j04.b1 PHD_FILE: MSMg01no360_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:21 2005
(566 letters)
>mm_chr19_52958514_52959483
Length = 970
Score = 973 bits (503), Expect = 0.0
Identities = 549/569 (96%), Gaps = 10/569 (1%)
Strand = Plus / Plus
Query: 5 gaattctttccacctagaacatttgggtgccagaca-----ctgaattatttaccccagt 59
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattctttccaccaagaacatttgggtgccagacactgctctgaattatttaccccagt 264
Query: 60 gcagaaccacaaataagaaacaaggtttagatgtctgacatgactttgccaaagccacag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcagaaccacaaataagaaacaaggtttagatgtctgacatgactttgccaaagccacag 324
Query: 120 tgcacaaacacaagaaaactgtcaatataggggaagcagggtaggttaggaagctaggaa 179
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 tgcacgaacacaagaaaactgtcaatataggggaagcagggtagggtaggaagctaggaa 384
Query: 180 ataggcaatgagagatgctaagaggaccttaaatgggaaatacatgtgacaggaaagcag 239
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataggcaatgagagatgctaaggggaccttaaatgggaaatacatgtgacaggaaagcag 444
Query: 240 agggtgaatgggt--ctcggggaaagagaagacagggaggtggggaagggcaggagggaa 297
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 agggtgaatgggtga---gggggaagagaagacagggaggtggggaagggcaggagggaa 501
Query: 298 agatgccaacaacaaaggagatatataagaaggccaccatgaaactaactactttgtatg 357
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 502 agatgccaacaactaaggagatatataagaaggccaccatgaaactaactactttgtgcg 561
Query: 358 ctaattttacaaatctaatcagaaaccaccatggtttgtgtgattatgagatctcaagct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctaattttacaaatctaatcagaaaccaccatggtttgtgtgattatgagatctcaagct 621
Query: 418 ctctccaccctgaaacttcatgtaacctaacagtgcagactgctgatgtagaaagggctt 477
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 622 ctctccaccctgaaacttcatgtatcctaacagtccagactgctgatgtagaaagggctt 681
Query: 478 ccagctgggcatggtgggcacacctttcatgccagcactttggaggcaaaaaataatgga 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccagctgggcatggtgggcacacctttcatgccagcactttggaggcaaaaaataatgga 741
Query: 538 tctctgggtgttcaggtccaatctggtct 566
|||||||||||||||||||||||||||||
Sbjct: 742 tctctgggtgttcaggtccaatctggtct 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 970
Length adjustment: 10
Effective length of query: 556
Effective length of database: 960
Effective search space: 533760
Effective search space used: 533760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_j04.g1 MSMg01no360_j04.g1 CHROMAT_FILE:
MSMg01no360_j04.g1 PHD_FILE: MSMg01no360_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:21 2005
(496 letters)
>mm_chr19_53093767_53094662
Length = 896
Score = 913 bits (472), Expect = 0.0
Identities = 490/496 (98%)
Strand = Plus / Minus
Query: 1 ctcctaggcgtggagaacggagggcgggcattgtgaaggggaatcttgaattctgtcctt 60
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 696 ctcctaggcgtggagaacggagggcgggcgttatgaaggggaatcttgaattctgtcctt 637
Query: 61 tgtgtactttccaaaatacaaatacacccacactgttccctagtggagatgaaccagacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgtgtactttccaaaatacaaatacacccacactgttccctagtggagatgaaccagacg 577
Query: 121 agccccaagtgcagggttatgcaaggacctggcacttgagtggtcagcctctccggttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 576 agccccaagtgcagggttatgcaaggacctggcacttgagtggtcagcctctctggttct 517
Query: 181 ctctaatcccagaacaaggccccaggagcctttacagtggtgatcggtaaatgctttcct 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 516 ctctaatcccagaacaaggccccaggagcctttacagaggtgatcggtaaatgctttcct 457
Query: 241 gtgctgtctcaggcagataccgggatccctgggcatccgcagcttcaagccaggacagcc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtgctgtctcaggcagattccgggatccctgggcatccgcagcttcaagccaggacagcc 397
Query: 301 actggatggggccagggctttctttcagaaatcctatctttcttcttatctgaaaggccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 actggatggggccagggctttctttcagaaatcctatctttcttcttatctgaaaggccc 337
Query: 361 tgttctttggcttggcctagacaaagggtcacattctgtcgaagcgaatttgttaatatg 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgttctttgacttggcctagacaaagggtcacattctgtcgaagcgaatttgttaatatg 277
Query: 421 aggctttggcggggtatgtggttctctttctggaagtcacgaatcagattttcctaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aggctttggcggggtatgtggttctctttctggaagtcacgaatcagattttcctaaact 217
Query: 481 gtatttttttctcctg 496
||||||||||||||||
Sbjct: 216 gtatttttttctcctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
