BAC Information

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BAC

Clone NameMSMg01-361A18
Chromosome19 (Build37)
Map Location 13,176,771 - 13,177,230
singlet/doubletsinglet
Overlap geneEG667271
Upstream geneOlfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457
Downstream geneOlfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361A18.T7 (MSMg01no361_a18.b1)MSMg01-361A18.TJ (MSMg01no361_a18.g1)
ACCAG470075AG470076
length749759
length of high quality
(start - end)		670 (48 - 717)460 (80 - 539)
definitionCHROMAT_FILE: MSMg01no361_a18.b1 PHD_FILE: MSMg01no361_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:58 2005CHROMAT_FILE: MSMg01no361_a18.g1 PHD_FILE: MSMg01no361_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTAGGCATTCTTTCTATTTCCTTGGAGGAGTGCCCTATTACT
AGGTAAACATACTACAGGAAAACAAGGCATGATCTCTTCTCTCCTACAGT
TCACAGGTTGTGTCTGTATACAAAATACAGGAGTCCATAAAGAAAACCAC
GAAGAGTTTGCTAGATAAAAGTGAATCAATGATTTTTTTCTTTGAGCATT
TTTTCTCACCTTTCTTGAAGGATCATAGCTAATCTTCAGGATAGTCCAAA
GAACTATATGTATAAACAATGACTGCAACCCATAAATTAAATAGTGTATA
ATACAGAATGGACTACAGTGTGTCCCTCCAATATTGCATTGGGTTTCAGC
GACTATTCCATGTGATATAGGGAGAATTATAGAGACTCAGAGAGCTCCAG
AGAGTCCCCCAGAGTATAGATGAAGATCTACTGTGTTCATAGGGAAAAGG
TAATTAAATGACCTTGGGGACTACACTTGTTTCTATATTTCTAGAAGTTA
AATTTCTTGGCTAATGGGTAAACAAAAATGCAAGTCTTATTAATGAGGTA
TCAGACAATGTTTCTATACATAATATGTATTGTAAAATGTTCATAATTGT
TTATGAATATCTGAATTCTCAAGCACTAGTTATTTGTACTAAAAATAACT
TTCATAATCCATCCTTCTAGCCTTTTCTTTTTACTTTTTAAAGCCATTC

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTAGGGTGGAAAATGTGG
TTCAGTATATATTTAAGAATAAATCAATGAATCTGGCAGATTTACATTCA
CAAAAGATAAAATAAAAGCTGTAAATATTATCTTGACCTCAATACAATCT
TTGTGAATGCACTTTTCACATCCTTGTTCCTCAGACTGTAAACCAGAGGG
TTCAACATAGGGATGACCATGGTGTAGAACACAGATGCGATTTTGTCAGT
GTCCATGGAATGACTGGACCTGGGCTGCAAGTACATGAATATGATTGTCC
CATAGAAAATAGAGACAGCTGTGAAGTGTGAGGCACATGTGGAGAGAGCT
TTGCGATATCCTGAATTGGAATGCATCTTTAGTATGTTGGTGAAAATGAA
TGTGTAGGATATTAAGATAAGTATAAGCGCAAAGAAGATATTGAAGCTGG
CTACAGAAATAAGAACCATGTCATTAGCATGTCTATGAGAACAAGATGCA
ATCATGACTGCTGGAATGTCACAGAAAAAATGATGGACCACGTTTAACTC
ACAGAAGGCAAGATATAATGTCTTCACAGCATATATGGAAGCATTCATGA
AACCACAGATATTACAGCTAATGACTAGACCTGCGCACATACGTGTTGTT
CTGGTGTTTGCATAATGTAACGGCTTAAATACTGTTGTTTACCGCTCCAA
AGTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_a18.g1 MSMg01no361_a18.g1 CHROMAT_FILE:
MSMg01no361_a18.g1 PHD_FILE: MSMg01no361_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:58 2005
         (460 letters)



>mm_chr19_13176571_13177430
          Length = 860

 Score =  859 bits (444), Expect = 0.0
 Identities = 456/460 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttagggtggaaaatgtggttcagtatatatttaagaataaatcaatgaatctggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttagggtggaaaatgtggttcagtatatatttaagaataaatcaatgaatctggcag 260

                                                                       
Query: 61  atttacattcacaaaagataaaataaaagctgtaaatattatcttgacctcaatacaatc 120
           |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 atttacattcccaaaagataaaatcaaagctgtaaatattatcttgacctcaatacaatc 320

                                                                       
Query: 121 tttgtgaatgcacttttcacatccttgttcctcagactgtaaaccagagggttcaacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtgaatgcacttttcacatccttgttcctcagactgtaaaccagagggttcaacata 380

                                                                       
Query: 181 gggatgaccatggtgtagaacacagatgcgattttgtcagtgtccatggaatgactggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggatgaccatggtgtagaacacagatgcgattttgtcagtgtccatggaatgactggac 440

                                                                       
Query: 241 ctgggctgcaagtacatgaatatgattgtcccatagaaaatagagacagctgtgaagtgt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ctgggctgcaagtacatgaatatgattgtcccatagaaaatagagacagctgtgaaatgt 500

                                                                       
Query: 301 gaggcacatgtggagagagctttgcgatatcctgaattggaatgcatctttagtatgttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggcacatgtggagagagctttgcgatatcctgaattggaatgcatctttagtatgttg 560

                                                                       
Query: 361 gtgaaaatgaatgtgtaggatattaagataagtataagcgcaaagaagatattgaagctg 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgaaaatgaatgtgtatgatattaagataagtataagcgcaaagaagatattgaagctg 620

                                                   
Query: 421 gctacagaaataagaaccatgtcattagcatgtctatgag 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctacagaaataagaaccatgtcattagcatgtctatgag 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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