Query= MSMg01no361_m05.b1 MSMg01no361_m05.b1 CHROMAT_FILE:
MSMg01no361_m05.b1 PHD_FILE: MSMg01no361_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:54 2005
(577 letters)
>mm_chr19_33849999_33850975
Length = 977
Score = 447 bits (231), Expect = e-129
Identities = 373/431 (86%), Gaps = 32/431 (7%)
Strand = Plus / Minus
Query: 6 aattcaaacactctcttttaattttattattaaaattttaacctaattcagat-ttttta 64
||||||||||| | |||||||||||||||||||||||||| ||||||| || ||||||
Sbjct: 418 aattcaaacacacaattttaattttattattaaaattttaatctaattcttatcttttta 359
Query: 65 atcctaaagaaataattctgggcatagtttaaacaatataaagta-taaccatgcccagt 123
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 358 atcctaaagtaataattctgggcatagtttaaacaatataaag-agtaaccatgcccagt 300
Query: 124 atcaaatgcattattcttgtaatattttccatgattataaacatgtgtgtatgtgtgtgt 183
||||||| |||||||||| |||||| |||||||||||||| |||||||| ||||||
Sbjct: 299 ctcaaatgtattattcttgcaatattctccatgattataaagatgtgtgt----gtgtgt 244
Query: 184 gtatgtgcatgtgca--tgtgcacatgtgtgcatgtatattaacttccttctattcccat 241
|| |||||||||||| ||||||||||| |||| ||| |||||| |||||| |
Sbjct: 243 gtctgtgcatgtgcacatgtgcacatgt----atgt----taagttccttgtattcc-a- 194
Query: 242 c-ttt---tcaggactttta-cttgattaaatattggacttttgtgaaaggccttttccc 296
| ||| | ||| |||||| || |||| ||||||||||||||||||||||||||||||
Sbjct: 193 cgtttgtgt-aggtcttttaacta-attatatattggacttttgtgaaaggccttttccc 136
Query: 297 gtctattgatgttcatgtaattactgtctttggtccatttatgggatcatgcgttttaca 356
|||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||
Sbjct: 135 atctattgatgttcacataattactgtctttcgtccatttatgggatcatg--tattaca 78
Query: 357 tacatttattggcttagaatatgtcaaattttccctgtagtatttctggaataaagccaa 416
| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 77 t----ttattggcttggaatatgtcaaattttccctgtagtatttctgaaataaagccaa 22
Query: 417 cttattaataa 427
||||||||||
Sbjct: 21 attattaataa 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_m05.g1 MSMg01no361_m05.g1 CHROMAT_FILE:
MSMg01no361_m05.g1 PHD_FILE: MSMg01no361_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:54 2005
(371 letters)
>mm_chr19_33318888_33319658
Length = 771
Score = 671 bits (347), Expect = 0.0
Identities = 365/371 (98%)
Strand = Plus / Plus
Query: 1 tctgacttcttcatgggaggaaaaaggtgaggtaaacaagactgagatcatggtttcttt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgacttcttcatgggagaaaaaaggtgaggtaaacaagactgagatcatggtttcttt 260
Query: 61 aatctcctctgagatagttcattcttattcttctgaattttgatggaactcttggagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctcctctgagatagttcattcttattcttctgaattttgatggaactcttggagaga 320
Query: 121 ggactgggagaggaggcaacatttggaatgtaaataaataaaacaattttaaaaagagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggactgggagaggaggcaacatttggaatgtaaataaataaaacaattttaaaaagagaa 380
Query: 181 atatacagtatcagtttatcaaaacaaaacaaaacactaaaacttcaaaatatttaaata 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatacagtatcagtatatcaaaacaaaacaaaacactaaaacttcaaaatatttaaata 440
Query: 241 tctttaggggagggggaggaaaaaggggaatatgctcaagcattggggataaacaggaga 300
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 441 tctttaggggagggggaggaaaaaggggaatatgcttaagcattgggggtaaacaggaga 500
Query: 301 gaagccatgagggctagaagaacgaatggaaaaatgcaaccttggtgggtgggatgtggg 360
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 gaagccatgagggcttgaagaacgaatggaaatatgcaaccttggtgggtgggatgtggg 560
Query: 361 ggtgaccctct 371
|||||||||||
Sbjct: 561 ggtgaccctct 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
