Query= MSMg01no362_e14.b1 MSMg01no362_e14.b1 CHROMAT_FILE:
MSMg01no362_e14.b1 PHD_FILE: MSMg01no362_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:36 2005
(481 letters)
>mm_chr19_22020540_22021420
Length = 881
Score = 617 bits (319), Expect = 0.0
Identities = 358/379 (94%), Gaps = 16/379 (4%)
Strand = Plus / Minus
Query: 5 gaattctcttgtaagcctctcactctcccttgcttcctattttaccagatttctgctctg 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaattctcttggaagcctctcactctcccttgcttcctattttaccagatttctgctctg 320
Query: 65 tcttcccacaggctcccaccaggttcttcatcaaacagcagaagaacctcaccaaagacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcttcccacaggctcccaccaggttcttcatcaaacagcagaagaacctcaccaaagacc 260
Query: 125 aatccagtgaagttgcctatcttagactgtcaacttctaatactgtgaggtaggcttttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatccagtgaagttgcctatcttagactgtcaacttctaatactgtgaggtaggcttttt 200
Query: 185 ttcttttttctttttccttttttctttttt-----tc-ttttttcttattc-ctttttt- 236
|||||||||||||||||||||||||||||| || ||||||||| || |||||||
Sbjct: 199 ttcttttttctttttccttttttcttttttctttttccttttttctttttttcttttttc 140
Query: 237 --------ttttttttggtttctcgagacacggtttctctttatagtcctggctgtcctg 288
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 139 ttattcctttttttttggtttctcgagacatggtttctctttatagtcctggctgtcctg 80
Query: 289 gaactcactctgtagacgaggctggcctcgaactcagaaatccccatgcctttgcctccc 348
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 gaactcactctgtagaccaggctggcctcgaactcagaaatccccatgcctttgcctccc 20
Query: 349 aagtgctgggattaaaggc 367
|||||||||||||||||||
Sbjct: 19 aagtgctgggattaaaggc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_e14.g1 MSMg01no362_e14.g1 CHROMAT_FILE:
MSMg01no362_e14.g1 PHD_FILE: MSMg01no362_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:36 2005
(538 letters)
>mm_chr19_21866595_21867534
Length = 940
Score = 932 bits (482), Expect = 0.0
Identities = 524/540 (97%), Gaps = 7/540 (1%)
Strand = Plus / Plus
Query: 1 ctgaaaaaggatggtgctgatggtcatacaactttacgaatataattaatgtcactggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaaaaaggatggtgctgatggtcatacaactttacgaatataattaatgtcactggat 260
Query: 61 --aaaaaaaaaaagagagagatttatgcttgtcttagcacattacgtgtttgacagctgg 118
||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aaaaaaaaaaaaaaaaagagatttatgcttgtcttagcacattacgtgtttgagagctgg 320
Query: 119 ggtgtggcttaagggtagagtgct-tgcctcgagtataccaggtacttgatccccagcac 177
|||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgtggcctaagggtagagtg-tgtgcctcgagtataccaggtacttgatccccagcac 379
Query: 178 tgaaaatgtttttcagggatcatgcctctaatcccagtatttgggaggctgaggcaggag 237
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 tgaaaatgtttttcagggatcatgcctctaatctcagtatttgggaggctgaggcaggag 439
Query: 238 cattgtcatcatgcctttgaggctagaccctgtttcaaaacaaagtcttaatgctattac 297
||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 cattg---tcatgcttttgaggctagaccctgtctcaaaacaaagtcttaatgctattac 496
Query: 298 attgtacacgttcaaaaccttctttcccttttcacagtgacagggtatcatgtatgccgc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 attgtacacgttcaaaaccttctttcccttttcacagtgacagggtatcatgtatgccgc 556
Query: 358 tggttccaggggccactcccctgcgttcctgcaacctcaaaacggaaacggccaccgctc 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 557 tggttccaggggccactcccctgctttcctgcaacctcaaaacggaaacggccaccgctc 616
Query: 418 acctggttatgttccggggaaggtggttcccttacgtcccgcgcctcctccaaagaacca 477
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 acctggttatgttcccgggaaggtggttcccttacgtcccgcgcctcctccaaagaacca 676
Query: 478 cgcctccgccaaactgacctccaggagccaagacgccccagcgacctttgctttctcccc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cgcctccgccaaactgacctccaggagccaagacgccccagcgacctttgctttctcccc 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 940
Length adjustment: 10
Effective length of query: 528
Effective length of database: 930
Effective search space: 491040
Effective search space used: 491040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
