BAC Information

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BAC

Clone NameMSMg01-362J10
Chromosome19 (Build37)
Map Location 19,799,264 - 19,799,423
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362J10.T7 (MSMg01no362_j10.b1)MSMg01-362J10.TJ (MSMg01no362_j10.g1)
ACCAG471238AG471239
length755764
length of high quality
(start - end)
171 (71 - 241)399 (74 - 472)
definitionCHROMAT_FILE: MSMg01no362_j10.b1 PHD_FILE: MSMg01no362_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:01 2005CHROMAT_FILE: MSMg01no362_j10.g1 PHD_FILE: MSMg01no362_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAGGATCCGCGGAAT
TCTCCCTGTTACCCTGAGACAAAATGCATTTTTTTCTTAGCTCATTCTGT
CAGATAATTTAGTTACAGTGACATGAAATTAACTGATACAGATGGTTGTA
AGCCAAGCCAAGGTGAGATCTGAAGGAATGTGATTTACCCAGATCTCCTA
AGATCTCTATAGAATAAGTTACATTAAGATTCTGACAAATAAAAAAGGAA
GGAAATATACTAAACCCAGACAAGTTTTCATGACCCTGGATGTTCCCATC
ATTATATTAGGGCCCTTTTTTCTAGGCATTAAAGAACTTCAGAGATTCTT
CCTAAAAGGATGAAGGTCAGATTGATTCATGTAGCTCAAAGGGCACCTTT
TTAACAAAAGCCATAAAGTATGGAACATTCAATAATACAATCACCCAAGA
ATTGGATGTCAAAATTTGGCCAAAATAATTATCATGAATATAAGCATAGA
ACCATTTTCATTCTCTTATTCATACTCTGAGAGAAGTACCTTATCCATTT
CTCATACCACCTTTAGTCCTTTACTTCCTACGTACCTCCTTTTATAACGC
TTGACTCTGTTAGAGCTCATCCTCCATCTTTGTAACGTATATAGCCCACT
TATCGCTGTCATGACTCCAATTTTAGACAACCCCGCTACCCGCCATCTTA
TAACCCCTCCTTTTCCTCCCCACACCATGTCGTCTCCCCCTCTCTCCCCC
TCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCACTGGTGCAGGTCTTTTCACTAGAC
CCAGAAGAATAGCATAATCAGGTATTTACCTAAGAACCTCTGGTGGTGGG
TTTAAAAATAGACTAGCATTGCATCAGAGCATTCACCTGGCTCCTGTGTT
TAGCTGATCTTAATTAGGGTTGTTCCTATTCTCAGTTGTAAACAAGGCCT
GGCTCCTACTATCTTTTCATGTATACATTTTCTTTGTTTCGTGTTAAGAA
CCAGTGTACCTTAGGGATGTTTTTACCTAGCCTTCTTATTTTTCTTGTTT
ATTCAAAGCCTGGTGTTTGCTTGGAGAAAATATATTCAGATTCAGCACTC
TCTTGTGTCTGTGTCTGTTTGTCAATTCTTGCTGACTCCCTGCCCATCTG
TCCAAAACCATGATTTTCCACGGATTGAGAGAGGCCAACGGAGCCTGTTC
TATGTCACATTTCTATTATATTAGATTCTTTATACCTGACTTTAGGATGA
GGCCCTTGCACCCCTTGTATTTGAGTTCTGCCTCCCGTTTTATTCCTGTT
TTCCTGTTTATCTCCAATTCCCTCTCATCCTTGTACCTCACCCTTCCACG
ATCCTCTCCTTCCCTCTTTCCCCTTCTCCCCTCTCCCCTTCGTATCTCCC
CCTTACCTTTATTTTTTTCCCCCGCTTCCCATCCCCTCCCATTTCCCCCT
CTTCCCCCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_j10.b1 MSMg01no362_j10.b1 CHROMAT_FILE:
MSMg01no362_j10.b1 PHD_FILE: MSMg01no362_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:01 2005
         (171 letters)



>mm_chr19_19799064_19799633
          Length = 570

 Score =  250 bits (129), Expect = 5e-71
 Identities = 156/171 (91%), Gaps = 11/171 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatgcatttttttcttagctcattctgtcagataatttagttacagtgacatgaaatt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatgcatttttt-cttagctcattctgtcagataatttagttacagtgacatgaaatt 259

                                                                       
Query: 61  aactgatacagatggttgtaagccaagccaaggtgagatctgaaggaatgtgatttaccc 120
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 260 aactgatacagatggctgtaagccaagccaaggtgagatctgaaggaatgtgcttcaccc 319

                                                              
Query: 121 agatctcctaagatctctatagaataagttacattaagattctgacaaata 171
           |||||||          |||||||||||| |||||||||||||||||||||
Sbjct: 320 agatctc----------tatagaataagtgacattaagattctgacaaata 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 570
Length adjustment: 8
Effective length of query: 163
Effective length of database: 562
Effective search space:    91606
Effective search space used:    91606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)