XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCAAA
GTTGCGTTCAATATGGTTGGGTTCTAATCTCGCATTTCTTAGCAGAGGCA
CATTTTTCTTTTGGATCTGAAAGCACTGCTGGCTGCTATCTGCGGTAAGA
AATACCGTCCTGAGGCAGATGTCTATTTCCTCTGCCAGGCTGGTGTGGAA
GCCGACCCTGTTTCCTCTTCCATCTGGATGCTGGGGAAGCAGTAAGGAGG
TGTCAAGCATTCTGCCCCAAACATTCTTTCTCACCCGCGTGCTCTCGTGC
TAGCTAACATCTTTTAAAATAGCAGCAAATGGCTCCGAAAGAGATAACTT
AAGCCTGTGAAGCCAGGACAACAGCGAGGGAAGCGGAATCTCTGAATTTG
TGATCCATGCCCATTCTGACATCTAGGCAAGCTTTGAACTACAAGTCCTG
GCTTCGAATCTCAGCTCCTAAGCAGCTTGCCGTGGACAGTATTGGAGGGT
GTAATCTCTGAGTTGCATTGCAGATTCATTAATATGAATGTGAAACACCC
ACAGTCTGAAGGAGAGGGAGAGATGTTTCTGCCCAGTTTCTATTGGGAAG
GAGTCACCTAGTTTTGGCTGGTCCTGCATTTTTGGGCTCCGTCCTTTCCC
GGGGAGGAAAAAAAAAGAAGAAGGCTTTTTGGAACGGGCGGAGAGGTGGT
TTCTCCCCCTCTCCGGATTTCTTGTTTCCTAGGCCTTGTCTGTAAAAAAA
AAAAAAATCCCCTTTTTTTTACTCTCCCCTCCTGTTTTTTTTTAATA

NTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCANAAATCTAAAAAGGACTGAT
GCCCTGAGAGCCAGCAGAAAATAATGGAAACAGACAACCTAGGAAATTAG
GAGGTTGGGGGGACCTTCCAGACTGCACCAGAGACCTGGGAGGTAAGAGA
CTCTCAGGACTCAAAGGAAGAGACCTTAGATGAAATTCTCATCAACAGGG
AGAGGAAATTTATGAGCCCACCTCCAGCAGAAAGACAGGACATCAAGTGA
GTGATGGGGTTGCCATCCCACTGTCACAACTCTAGCCCATAATTGTTCCT
GTCTGAAAGAATTACAGGAATGGAAATGGAGAGAAGCCTGAGGAAAAGAA
GGTCCAGTGACAGGCCCAAAGTGAGATCCAGCTCAAGGGGAGGTTCCAAG
GTCTGACACTACTACTGAAGCTATGGAGCACTTACAAAAAGGAACCTAGA
ATGACCACACTCTGGAAGACCCAACAAGCAGCTGAAAGAGTCAGATGCAG
ATATTTGCACCCAACCAATGGACAGAAGCAGTTGACCCCCGTTTTTGAAT
TAGGAAAGGCTGAAAGAAGCTGAAGAGAAGGGCAATCTTGGAGGAGGATC
AGCATTCTGCAATTAATCCGGACCCAACTCCTGATCACCAAACAGGCTGC
TTACACCCACCTGATTTGAAGGCCCCCTCCCGCATATCGTAAAGGTACTT
C

Query= MSMg01no363_d18.b1 MSMg01no363_d18.b1 CHROMAT_FILE:
MSMg01no363_d18.b1 PHD_FILE: MSMg01no363_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:53 2005
         (488 letters)



>mm_chr19_14480777_14481664
          Length = 888

 Score =  897 bits (464), Expect = 0.0
 Identities = 479/484 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtcaaagttgcgttcaatatggttgggttctaatctcgcatttcttagcagag 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaattcagtcaaagctgagttcaatatggttgggttctaatctcgcatttcttagcagag 629

                                                                       
Query: 65  gcacatttttcttttggatctgaaagcactgctggctgctatctgcggtaagaaataccg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gcacatttttcttttggatctgaaagcactgctggctgctatctgcggtaagaaataccg 569

                                                                       
Query: 125 tcctgaggcagatgtctatttcctctgccaggctggtgtggaagccgaccctgtttcctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcctgaggcagatgtctatttcctctgccaggctggtgtggaagccgaccctgtttcctc 509

                                                                       
Query: 185 ttccatctggatgctggggaagcagtaaggaggtgtcaagcattctgccccaaacattct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttccatctggatgctggggaagcagtaaggaggtgtcaagcattctgccccaaacattct 449

                                                                       
Query: 245 ttctcacccgcgtgctctcgtgctagctaacatcttttaaaatagcagcaaatggctccg 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttctcatccgcgtgctctcgtgctagctaacatcttttaaaatagcagcaaatggctccg 389

                                                                       
Query: 305 aaagagataacttaagcctgtgaagccaggacaacagcgagggaagcggaatctctgaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaagagataacttaagcctgtgaagccaggacaacagcgagggaagcggaatctctgaat 329

                                                                       
Query: 365 ttgtgatccatgcccattctgacatctaggcaagctttgaactacaagtcctggcttcga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttgtgatccatgcccattctgacatctaggcaagctttgaactacaagtcctggcttcga 269

                                                                       
Query: 425 atctcagctcctaagcagcttgccgtggacagtattggagggtgtaatctctgagttgca 484
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 268 atctcagctcttaagcagcttgccgtggacagtattggagggtgtaatctctgaattgca 209

               
Query: 485 ttgc 488
           ||||
Sbjct: 208 ttgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)