BAC Information

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BAC

Clone NameMSMg01-363I07
Chromosome19 (Build37)
Map Location 54,109,452 - 54,109,719
singlet/doubletsinglet
Overlap genenone
Upstream geneXpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2
Downstream geneAdra2a, LOC100043004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363I07.T7 (MSMg01no363_i07.b1)MSMg01-363I07.TJ (MSMg01no363_i07.g1)
ACCAG471939AG471940
length756747
length of high quality
(start - end)
279 (40 - 318)523 (79 - 601)
definitionCHROMAT_FILE: MSMg01no363_i07.b1 PHD_FILE: MSMg01no363_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:15 2005CHROMAT_FILE: MSMg01no363_i07.g1 PHD_FILE: MSMg01no363_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCAGGATTGCAACTTGATAACTGACACTAAGCCTTTAGCTGTTGCCAC
TGTCCTCTTCCATGTTCCTTCCCAAACCAAAGTCCCAGATGCCTAGCTGG
TACCGATTTTGTGTATTTTCTTGTTACTACAACAAATTATTTGATGGAAA
CGAGAGGAAGAGTTTCTTCTGGTTCTGCTTCAGAGGGATTGACGTCATGT
GGTATGGAAGGCAGGGCAAACACGCTCTGAGTGTGGTCATAGTGGGCCTG
GAAGGAGAGAAAGCAGGTTTTTTTTTTAGGTGCATGGCCTACTTCTGTCA
ACCAGGCCTACCTTCCGTAAGCTCATTAGCCTTCAAAATAAGGTCACCAG
CTGGAGGGCCTGTGGAGCGCTTTTGGATACCGTGTAGTGACTGACTGCTA
GCCTTCAAGATAGGCTTTGCAAGTGACTGCTTATGAATAGGCCGCCTTCA
AGTCTAATGCATTGAGTTTCTTTTGTACTAACTATCTTACGGTTTTTACT
GTCTCTCTCACTGCTACTTGTTCCCGATTTTTTCTTCTTCTTGCCCGTCT
TTTTTTTTTTCTCTACCCCTCTCTTTTCCCTTCTCTTCCTCCACTTTTTT
CCATCCTACACCTTTCCCTATCTTTTTCTTTCCTCGCTCTTATTCGCTAT
TGCTATCTCTTTCTTTTAATGCCTTTATTTTCTTATCCCTTTCTATATTT
CTTCTT
NNNCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTACCAAGAGAAATCTCTCCCACTGAGGCCAGACA
AGGCAGCCATGTTAGGGAGCAGGTACCACAGTCAGGCTGCAGCTTTAGGC
GGAGCTTTTGCTCCAGATGTTGGGGAGCCAGACGGAGACTTAGCTGCATG
TCTGCTACATATGTGCCAGGGGCCTCGTTTCAGTTGGTATGTGTTTTTGA
TTGGTAGCTCAGTTTCTGAGAGCTCCCAGAGGTCCCGGTGAGTTGAGTTT
GTTGGTCCTCCTGTGGGGTTTTTTTTCATTCAGAGCCTTCAATCCTTCCT
CAACTCTTCTAGAATAGTCCCTAGCCTCCGCCCAATGCTTGGCTGTGGGT
ATCTGTGTCTGTTTCAGTCAGCCACTGAGTAGAGCCTCTCAGAGGATAGT
TATGCTAGACTCCTGTCTGCAAGCATGACAGAGTATCGTTCATACTGTCA
GGGACTGGTGTTTACCCATTCCACCTTGTATTTTGAGTCAGGCTCTCTCA
CTGGACCTGGAGAGCATTGATTTGGCTAAGTTGTTTGTCTAGAGAGCTTC
AGACACTCACCTGATCGTTCCTAGAAAGCACTGAAGCCACAGGCATGCAT
TTGCTTTATCTATCGGCTACATAATACTGGGCATGGGCTGCTCCGTGGAC
CTTATGCTTGCAAACGANGCACGCCACCCCCTGGGCCATCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_i07.b1 MSMg01no363_i07.b1 CHROMAT_FILE:
MSMg01no363_i07.b1 PHD_FILE: MSMg01no363_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:15 2005
         (279 letters)



>mm_chr19_54109248_54109920
          Length = 673

 Score =  464 bits (240), Expect = e-135
 Identities = 263/274 (95%), Gaps = 6/274 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaccaggattgcaacttgataactgacactaagcctttagctgttgccactgt 64
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||  ||
Sbjct: 205 gaattctcaccaggactgccacttgataactgacactaagcctttagctgttgccaaggt 264

                                                                       
Query: 65  cctcttccatgttccttcccaaaccaaagtcccagatgcctagctggtaccgattttgtg 124
           |||||||||||||||||||      |||||||||||||||||||||||||||||||||||
Sbjct: 265 cctcttccatgttccttcc------aaagtcccagatgcctagctggtaccgattttgtg 318

                                                                       
Query: 125 tattttcttgttactacaacaaattatttgatggaaacgagaggaagagtttcttctggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tattttcttgttactacaacaaattatttgatggaaacgagaggaagagtttcttctggt 378

                                                                       
Query: 185 tctgcttcagagggattgacgtcatgtggtatggaaggcagggcaaacacgctctgagtg 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 379 tctgcttcagagggattgacgtcatgtgggatggaaggcagggcaaacacgctctgagtg 438

                                             
Query: 245 tggtcatagtgggcctggaaggagagaaagcagg 278
           ||||||||||||||||||||||||||||||||||
Sbjct: 439 tggtcatagtgggcctggaaggagagaaagcagg 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 673
Length adjustment: 9
Effective length of query: 270
Effective length of database: 664
Effective search space:   179280
Effective search space used:   179280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)