BAC Information

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BAC

Clone NameMSMg01-364G15
Chromosome19 (Build37)
Map Location 27,643,014 - 27,643,413
singlet/doubletsinglet
Overlap genenone
Upstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
Downstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364G15.T7 (MSMg01no364_g15.b1)MSMg01-364G15.TJ (MSMg01no364_g15.g1)
ACCAG472618AG472619
length808798
length of high quality
(start - end)
398 (47 - 444)399 (81 - 479)
definitionCHROMAT_FILE: MSMg01no364_g15.b1 PHD_FILE: MSMg01no364_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:31 2005CHROMAT_FILE: MSMg01no364_g15.g1 PHD_FILE: MSMg01no364_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAGTCTATAATTGCGGCGCTAATACGACTCCTATATTCAGAGATCCGC
GGAATTCCTTTTATTTGCCCAACGTCTGGGCATGGAGCCTGCCCTGGAAC
GTAGTTGGTATGCCCAGTGGGCACTCCATTGGAGAAAACTGATTTTTCCT
TTCTTAGCTATCAACTCTGACTAGTTCTTGTTTGTGGTGGGACTTCATGT
CCATTTCCATTTCTTAGTGCTGGGATTTTGTCTGGTTTAAACTTGTGCAA
TTTTTATGTGTGCTGTCACTGTGTCTGTGAGTTCATATGTATATCAGCCT
TGTTGTGTCTGGAAGATGCTGTTTGTTGGATGAGTAAGCATCAAAGATGT
GTAGACAAGAATCCATCACCTCACGCTCTTGCAATCTTTCCTCCTCTTCT
GCCACCCAGATATCTGAACCTTGAAGGAAGAGGATTTGATGAAAAAATCC
CAATTATGACTCCAGTTCTCCTAAGTCTCTCACCCCCTGCTCACGTGGAC
ATCCTTTTATGTTGGACCAAATAAGAAAAAATTGTCTACCACTATATTCA
GCCACATTTGGGATCTTTGTTTGCCTTCTCCAAAAAAGGTTGGTTGAACC
ACCACGAACAAATCATCGTTCATAATAATCTTTCCTCTCTTTTAGTCCTT
TCTTTATTTTTATTTTTAACTTACCCCCTCTCAATTACATATCAGTGATT
TTTATCACCTCTATCAATTTTCTCCCTTTTTTTCCCTTCTGTTTTAACTG
ACTCACTCTACATTCTATCTAAATTATCACTATGCACGTTATTATTTTTT
TACACCCG
NNTTCGATGATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATCCAAGTCCCACCCCAC
ACTTACTTAATTACATATTTGGAAAGATTCATTTTTGCTTTTCATAAGAT
GGGTACAAAGCTGTATGCTGCCTATCCCAAGGAGACACAAAGATCAAACA
CATGCACAGGGACATCCTTTGGAACTGTAAATTTTTTCTGCAGATACAAA
AAGATTTTCTTGCTTTTTGTTGCTTCTGCCTGAGGGGGATATTTTTCCCC
ACTGCATCAAAATATAATTTAACATCTGCCTATGTCCTCAAATATAACCA
ATTCTGTGAAAATTGTACCAATGGTAGAATAACGAATGAGCTCAATATAA
TTTTCTGTGAGAACAAAGAGATATAATTAGAGGACACTCAGTGGTTTCCT
GAGGTGCTATGAGGGATAGTGTAATGGAATTATCTGTGTTACTGTCCTCT
CTTCTTGACTCTTGTCAATCCCATTCTGGAAATGTCAGGTGGAAAGGTCC
CACAAAAAACAAAAAATTTCCTTTTCACTGGTACCTTTTAACAAAAAAAT
TTTCTGCTTTGGCCCCACAAATGTTTTCTAAAGTTTTCAACTTAATTTTA
AAAAGAAAACCCCTATTTTTTTCTATTGCCTCTCCTTCTTTTCGTTAAAT
AAAAAAATTAATAATCTTTTTTATATTTCCTTTCCTTCATTTTACTATAT
GCTCATTCTTGATTATTTCACATTAAATAACATATTCTCTCCATCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_g15.g1 MSMg01no364_g15.g1 CHROMAT_FILE:
MSMg01no364_g15.g1 PHD_FILE: MSMg01no364_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:31 2005
         (399 letters)



>mm_chr19_27642814_27643613
          Length = 800

 Score =  743 bits (384), Expect = 0.0
 Identities = 396/400 (99%), Gaps = 1/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatccaagtcccaccccacacttacttaattacatatttggaaagattcatttttgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ccatccaagtcccaccccacacttacttaattacatatttggaaagattcatttttgctt 541

                                                                       
Query: 61  ttcataagatgggtacaaagctgtatgctgcctatcccaaggagacacaaagatcaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttcataagatgggtacaaagctgtatgctgcctatcccaaggagacacaaagatcaaaca 481

                                                                       
Query: 121 catgcacagggacatcctttggaactgtaaattttttctgcagatacaaaaagattttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 catgcacagggacatcctttggaactgtaaattttttctgcagatacaaaaagattttct 421

                                                                       
Query: 181 tgctttttgttgcttctgcctgagggggatattttt-ccccactgcatcaaaatataatt 239
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 420 tgctttttgttgcttctgcctgagggggatattttttccccactgcatcaaaatataatt 361

                                                                       
Query: 240 taacatctgcctatgtcctcaaatataaccaattctgtgaaaattgtaccaatggtagaa 299
           ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 360 taacatctgccaatgtcctcaaatatagccaattctgtgaaaattgtaccaatggtagaa 301

                                                                       
Query: 300 taacgaatgagctcaatataattttctgtgagaacaaagagatataattagaggacactc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 taacgaatgagctcaatataattttctgtgagaacaaagagatataattagaggacactc 241

                                                   
Query: 360 agtggtttcctgaggtgctatgagggatagtgtaatggaa 399
           ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 240 agtggtttcctgaggtgctgtgagggatagtgtaatggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 800
Length adjustment: 9
Effective length of query: 390
Effective length of database: 791
Effective search space:   308490
Effective search space used:   308490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)