BAC Information

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BAC

Clone NameMSMg01-365A19
Chromosome19 (Build37)
Map Location 30,998,768 - 30,999,253
singlet/doubletsinglet
Overlap genePrkg1
Upstream geneIl33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1
Downstream geneLOC625995, Cstf2t, 8430431K14Rik, 1810073H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365A19.T7 (MSMg01no365_a19.b1)MSMg01-365A19.TJ (MSMg01no365_a19.g1)
ACCAG473099AG473100
length770568
length of high quality
(start - end)		486 (60 - 545)54 (443 - 496)
definitionCHROMAT_FILE: MSMg01no365_a19.b1 PHD_FILE: MSMg01no365_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:27 2005CHROMAT_FILE: MSMg01no365_a19.g1 PHD_FILE: MSMg01no365_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAA
TCTCGTACAGAGTCAGAGAAAGTGACTCATAAGAGTTTCTGTGTCTGTAG
ACAATTCTCTCCTTTTGGCACCCGGCTGTCACGGCACTTTATATTTCTGC
TTAATACTTCTCACACTTAGACATGAATCACACTTGGATATGTTTATTTT
CCATGAGATAAAAGATCCTTGAGGCTACCAACTTTTCTCACTCATCCCAG
GGTGACTCAGATGGGACTCTTTTGAGTCAGCCCCCAACTCACCCCTTTCC
ATCCTCAATTACACATCCAATACAAACAACATAAAACTAGTCGAATAAAA
GATTAGTATAGGTAAGCATTCAAGTTTCTGTTGCGTTCAAAAATCCCATG
CAAAGGTGACTCATGGCCAGGTCAATTTTATATTTAGTGTGAAATATGTT
GATGTTTTCATTCTATCCCCACCATTTTCTGTGTAGAAGTCAACTGGGGT
ATTGGGGTAGGGTCTTAGATAGTATCACCTATCAACTTGACTCAGTCTAC
AGTCACTCAAGGTAGGAGGCTCAACTGAACTGTTGCTGATACTATAATGT
CTTGACTCCCTATTGACGTGAGACCGCCAGCCCAATGCGGGTGGGATTAT
TTCTTATGCACGCGGCTCTGCATGTTTATTGCTCCCCGATTCAATCCCCC
CTCTTTTTCCCATTTTTCACAAAGGATTTCCTATTTTTTCCTCCTTCTTT
TTGCCTTCATTTTTTTCACC

CATGATGTGGGTAGGCCTGGGCGGGCCGGCCTGGGTTTCGTTCGGAAAAT
TTTTAAGGGTGGGGAACACCTTTTTTTTTTGGAAAAAGGGTGGTGATTTC
CCCGGGGGGGGGAAATTTTTCTTTCCCCGTGGGGAAAAAAAAGGGGGTTT
TTGGGGGGTTTTTTTNNAAAAAAAAAAGATGGGTGTGTGTGTGNNTNTAG
AGTNTGTTGTGGTTTTTTTTTTATTTTNTNTTGGGTTNTNNTNNNNGGGT
TTTTTAAGGGGTTTTTTTTTGGAAAATTTGTGGGGTTGGGGGGCNAAAAT
TTTTTTTTTGTTTTAAAAAAAAAAAAAAACCCCCCCCGGAAAAAAAAAGG
GGGGGGGGGGGGGGGNTGTGGTTTCCTCCCCCCTTTTTTTTTTTTTGGGG
CCCCCGTTTGGGGGGGGGGCCCAAAAAAAATAGGAATTTTTTTTTTTTTT
TTGGGGGGGGGGGGGNTTTTTTTTTTTTTTAAAAAAATTTTTTTTTTTTG
GNGCGGGGGGGGTGGTTTTTTGTTTTTTTTCTTTCCCTCTTTCCTTTTGT
GGTGGGGGGGGGGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_a19.b1 MSMg01no365_a19.b1 CHROMAT_FILE:
MSMg01no365_a19.b1 PHD_FILE: MSMg01no365_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:27 2005
         (486 letters)



>mm_chr19_30998568_30999453
          Length = 886

 Score =  901 bits (466), Expect = 0.0
 Identities = 481/486 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtcagagaaagtgactcataagagtttctgtgtctgtagacaattctctccttttggc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 201 gagtcagagaaagtgactcataagagtttttgtgtctgtagacaattctttccttttggc 260

                                                                       
Query: 61  acccggctgtcacggcactttatatttctgcttaatacttctcacacttagacatgaatc 120
            ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ccccagctgtcacggcactttatatttctgcttaatatttctcacacttagacatgaatc 320

                                                                       
Query: 121 acacttggatatgtttattttccatgagataaaagatccttgaggctaccaacttttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacttggatatgtttattttccatgagataaaagatccttgaggctaccaacttttctc 380

                                                                       
Query: 181 actcatcccagggtgactcagatgggactcttttgagtcagcccccaactcacccctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcatcccagggtgactcagatgggactcttttgagtcagcccccaactcacccctttc 440

                                                                       
Query: 241 catcctcaattacacatccaatacaaacaacataaaactagtcgaataaaagattagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcctcaattacacatccaatacaaacaacataaaactagtcgaataaaagattagtat 500

                                                                       
Query: 301 aggtaagcattcaagtttctgttgcgttcaaaaatcccatgcaaaggtgactcatggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtaagcattcaagtttctgttgcgttcaaaaatcccatgcaaaggtgactcatggcca 560

                                                                       
Query: 361 ggtcaattttatatttagtgtgaaatatgttgatgttttcattctatccccaccattttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtcaattttatatttagtgtgaaatatgttgatgttttcattctatccccaccattttc 620

                                                                       
Query: 421 tgtgtagaagtcaactggggtattggggtagggtcttagatagtatcacctatcaacttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtagaagtcaactggggtattggggtagggtcttagatagtatcacctatcaacttg 680

                 
Query: 481 actcag 486
           ||||||
Sbjct: 681 actcag 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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