BAC Information

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BAC

Clone NameMSMg01-365B03
Chromosome19 (Build37)
Map Location 60,118,151 - 60,289,483
singlet/doubletdoublet
Overlap geneLOC100043091, LOC100043093, D19Ertd737e
Upstream gene4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087
Downstream gene4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322, BC029127, LOC100043112, EG547091, LOC433261, EG633057
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365B03.T7 (MSMg01no365_b03.b1)MSMg01-365B03.TJ (MSMg01no365_b03.g1)
ACCAG473115AG473116
length730740
length of high quality
(start - end)		401 (67 - 467)316 (58 - 373)
definitionCHROMAT_FILE: MSMg01no365_b03.b1 PHD_FILE: MSMg01no365_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:28 2005CHROMAT_FILE: MSMg01no365_b03.g1 PHD_FILE: MSMg01no365_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,289,083 - 60,289,483)(60,118,151 - 60,118,466)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCAGATCTACAAGACAAGGAAGTTTCTAGAGATTGTACAAGAGTA
GAAACCAGGCATTAGAGTAACTATTCACAGCTAGACCTTGTTTATATCTA
AGTGTCTTTTGATAAGTGTGTTATGAGCCCTAACTAGTTTGGTAATTCTG
TGACATTAAAAATTTTGATTTCTTGAAGTTTTTTTAGTAAAATAAAATAT
TTCCATAGGAGAATAAAGTAATTATTTGTTGCTTTCTTCACTGTATAGTA
GTCAGCATAGCAGACCTAACTGAAGATGGTGAAAGGCTATGGAGTGAAGT
GTTGAGCTGCAGGAATGGGCTGTGGTTGAGAATTCAGACTGCAAACCTGG
ATGTGGGTGGCTTTACACCTTACAGACTGATGTCAGCCAAGTCGAGTAAT
TTATGGCTATTTCCACCTCTTGCAAACAAGCTAACATTTCATGGAGCTGT
GAGGATGCAATGGAACGCTTTTGGAAAATAAGCCCAAGGTTCTATTATTT
TGGGGAAAACCTCCTAAAGGGTATCCCGTTGCTGGCCATTAACCTTATTG
GTTACAAAGGGAAAAACACAATCCCCCTGGTGTCCCTTCCTTCTCTTCCC
CCCCCCCTCAATTTGGAAAATTTTTTTCCCTCCCCCCTTTTTTTAGGGCG
GCCTATTTTTTGGAACAATATGTTGTGGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTTACAGGAAAGGTTGGCTTTGGGATTCATGTGTACCTCCCAC
AGATTAAATGATAATGTACATGTGTGTGTGTGTATGTGTGCGTGTGCCTG
TGTATGCATATGTGCATATGAGTGCAAATGCCCAAGGGGTAGAAAAGGGT
GTAGAATCTGATGGAGCTGGAATTATAGTCAGTTGTGAGAGGTTACTGTG
AGCTGCAGGTGCCAGCATGGAGTTCATGAGTCAGACATTTGGTAAGTATT
TGGTAATAGGTTGAAGTAGGGTTGTTTTATAAGATAAAATAAAGCTAACA
CCCACTTCTGCACGGAATTAAACAATTTAGGCAGCCCAGACTGTATGTAG
CTTTCAGCAAGTTGTCCATTAGGCTATTTAATTTATTTTTTTTTACGTGC
CTAATTGGAACCCTGAGTCTCTTGTCTTTTAAGAACCTAATCCAAACCAC
CAAAATAAAATATTTTTTTCTTAAACCAAATTGATTCCAAATTAAAATAA
AGAATTTAATTGGGGAGTTGGAAAACCTTTGGGTAAAAAATTAATTTTCA
GTTTCTTTCCCAAAAAAAGGGGGCTTTTTGGGGTTTTTGCCTTTTTTTAC
CCAAAGGTTTTTTTTCCCCCCCGGCTCCCCCAAAACTTTGGGAACCAAAA
AACAAGGGAAATCCCCCCATCTTCTTTTTTAAAATAGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_b03.b1 MSMg01no365_b03.b1 CHROMAT_FILE:
MSMg01no365_b03.b1 PHD_FILE: MSMg01no365_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:28 2005
         (401 letters)



>mm_chr19_60288883_60289683
          Length = 801

 Score =  775 bits (401), Expect = 0.0
 Identities = 401/401 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacaaggaagtttctagagattgtacaagagtagaaaccaggcattagagtaactattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agacaaggaagtttctagagattgtacaagagtagaaaccaggcattagagtaactattc 542

                                                                       
Query: 61  acagctagaccttgtttatatctaagtgtcttttgataagtgtgttatgagccctaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acagctagaccttgtttatatctaagtgtcttttgataagtgtgttatgagccctaacta 482

                                                                       
Query: 121 gtttggtaattctgtgacattaaaaattttgatttcttgaagtttttttagtaaaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtttggtaattctgtgacattaaaaattttgatttcttgaagtttttttagtaaaataaa 422

                                                                       
Query: 181 atatttccataggagaataaagtaattatttgttgctttcttcactgtatagtagtcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atatttccataggagaataaagtaattatttgttgctttcttcactgtatagtagtcagc 362

                                                                       
Query: 241 atagcagacctaactgaagatggtgaaaggctatggagtgaagtgttgagctgcaggaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atagcagacctaactgaagatggtgaaaggctatggagtgaagtgttgagctgcaggaat 302

                                                                       
Query: 301 gggctgtggttgagaattcagactgcaaacctggatgtgggtggctttacaccttacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gggctgtggttgagaattcagactgcaaacctggatgtgggtggctttacaccttacaga 242

                                                    
Query: 361 ctgatgtcagccaagtcgagtaatttatggctatttccacc 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgatgtcagccaagtcgagtaatttatggctatttccacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_b03.g1 MSMg01no365_b03.g1 CHROMAT_FILE:
MSMg01no365_b03.g1 PHD_FILE: MSMg01no365_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:28 2005
         (316 letters)



>mm_chr19_60117951_60118666
          Length = 716

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttacaggaaaggttggctttgggattcatgtgtacctcccacagattaaatgataatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttacaggaaaggttggctttgggattcatgtgtacctcccacagattaaatgataatgt 260

                                                                       
Query: 61  acatgtgtgtgtgtgtatgtgtgcgtgtgcctgtgtatgcatatgtgcatatgagtgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgtgtgtgtgtgtatgtgtgcgtgtgcctgtgtatgcatatgtgcatatgagtgcaa 320

                                                                       
Query: 121 atgcccaaggggtagaaaagggtgtagaatctgatggagctggaattatagtcagttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcccaaggggtagaaaagggtgtagaatctgatggagctggaattatagtcagttgtg 380

                                                                       
Query: 181 agaggttactgtgagctgcaggtgccagcatggagttcatgagtcagacatttggtaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggttactgtgagctgcaggtgccagcatggagttcatgagtcagacatttggtaagt 440

                                                                       
Query: 241 atttggtaataggttgaagtagggttgttttataagataaaataaagctaacacccactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttggtaataggttgaagtagggttgttttataagataaaataaagctaacacccactt 500

                           
Query: 301 ctgcacggaattaaac 316
           ||||||||||||||||
Sbjct: 501 ctgcacggaattaaac 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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