Query= MSMg01no365_h12.b1 MSMg01no365_h12.b1 CHROMAT_FILE:
MSMg01no365_h12.b1 PHD_FILE: MSMg01no365_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:58 2005
(528 letters)
>mm_chr19_29398186_29399111
Length = 926
Score = 948 bits (490), Expect = 0.0
Identities = 518/528 (98%), Gaps = 2/528 (0%)
Strand = Plus / Plus
Query: 1 caaaggaaagtagtttacaagcagttccacttcattttatgactctcattaattccttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaggaaagtagtttacaagcagttccacttcattttatgactctcattaattccttat 260
Query: 61 ttccaagtcaagtaagaacattgatttttttttttaaagttctgataagtcgtttcactt 120
|||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct: 261 ttccaagtcaagtaagaacattga--tttttttttaaagttctgataagttgcttcactt 318
Query: 121 acaaacactgctttggaaaaaactataaaattagttaagcgaatctacaaacacatttta 180
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 319 acaaacactgctttgaaaaaaactataaaattagttaagggaatctacaaacacatttta 378
Query: 181 caacataggagaaaggctaatatcagaatggcaagggtaggtcaagaccatgagatctct 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 379 caacataggagaaaggctaatatcagaatggcaagggtaggtcaagaccacgagatctct 438
Query: 241 atgcaattcagcacgctagttcaccttcagtgctgctgcaaaccacagagaagcttcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgcaattcagcacgctagttcaccttcagtgctgctgcaaaccacagagaagcttcatc 498
Query: 301 tgtccccatactacaatctacatatctgcatcgatgagctatccatgccgagactcatct 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtccccatactacaatctacctatctgcatcgatgagctatccatgccgagactcatct 558
Query: 361 catccgcccttgtccttccctgtgccctttattaagttttcacttcacatgaattgctcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 catccgcccttgtccttccctgtgccctttattaagttttcacttcacatgaattgctcc 618
Query: 421 gttggctttgctctccctctctcagcccttctggacgaaccttactgccctacgctgatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 619 gttggctttgctctccctctctcagcccttctggacgaaccttactgccctacgctgttg 678
Query: 481 cttcttttcccctcctgttcaacacatcctgacctcctcgctcttccc 528
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 679 cttcttttcccctcctgttcagcacatcctgacctcctcgctcttccc 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 926
Length adjustment: 10
Effective length of query: 518
Effective length of database: 916
Effective search space: 474488
Effective search space used: 474488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_h12.g1 MSMg01no365_h12.g1 CHROMAT_FILE:
MSMg01no365_h12.g1 PHD_FILE: MSMg01no365_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:58 2005
(512 letters)
>mm_chr19_29589132_29590043
Length = 912
Score = 793 bits (410), Expect = 0.0
Identities = 446/460 (96%), Gaps = 5/460 (1%)
Strand = Plus / Minus
Query: 56 ttcagagggggcttgaaagatgactcagtagttaagaacacttgctgttcttgcgttccc 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 ttcagagggggcttgaaagatgactcagtagttaagaacacttgctgttcttgcgttccc 853
Query: 116 agcatccacatggtggttcacaaccatctgtaactccatcaatttccaggggatcaaaca 175
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 852 agcatccacatggtggttcacaaccatctgtaactccatccatttccaggggatcaaaca 793
Query: 176 ccattatctggccatcatgggcacaaacatgctcatggtgcacagacagacctgtaggca 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ccattatctggccatcatgggcacaaacatgctcatggtgcacagacagacctgtaggca 733
Query: 236 aaa---tttcttacatatggaaagaagactgctttggtcattgaccagggaggaggcacc 292
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 732 aaacac--tcatacatatggaaagaagactgctttggtcattggccagggaggaggcacc 675
Query: 293 aggagcatagctctccccttcctacagtttatcaggcccaatgatccccctcacctggtg 352
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 674 aggagcatagctctccccttcttacagtttatcaggcctaatgatccccctcacctggtg 615
Query: 353 tctctcaacctgctccattagatacgtagcacaatcctgccttgtcaggaagcttcctgc 412
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 614 tctctcaacctgctccattagatacgtagcacaatcctgccgcgtcaggaagctttctgc 555
Query: 413 tgggtccaagtggtgatttcctcacgtgcactcctgttcgggtggaagccatgtccaggt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tgggtccaagtggtgatttcctcacgtgcactcctgttcgggtggaagccatgtccaggt 495
Query: 473 gcaagccacgttcccagtgatcacccaagcttctcctcca 512
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 494 gcaagccacgttcccagtgatcacccaggcttctcctcca 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
