Query= MSMg01no365_m03.b1 MSMg01no365_m03.b1 CHROMAT_FILE:
MSMg01no365_m03.b1 PHD_FILE: MSMg01no365_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:20 2005
(271 letters)
>mm_chr19_57581117_57581786
Length = 670
Score = 456 bits (236), Expect = e-133
Identities = 260/270 (96%), Gaps = 7/270 (2%)
Strand = Plus / Minus
Query: 5 gaattctcaga---ttatcttgctgtcagataaggttaactggccattgatgatggtggt 61
||||||||||| || ||||| |||||||||||||||||||| ||| ||||||||||
Sbjct: 486 gaattctcagaggg--at-ttgctatcagataaggttaactggcc-ttggtgatggtggt 431
Query: 62 tgtcctgggtggtcttcattgtacctgtttagggtgacgaatgactttaattgttttagt 121
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 430 tgtcctgggtggtcttcattgtacctgtttagggtgacgaacgactttaattgttttagt 371
Query: 122 gttccctctgtgctctcacgggacccaggtttagaagacaagttagcattatctttttaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gttccctctgtgctctcacgggacccaggtttagaagacaagttagcattatctttttaa 311
Query: 182 ttcccaccctggctcccatcacaagccaggcaactgtatatagacggtcttttcatttgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttcccaccctggctcccatcacaagccaggcaactgtatatagacggtcttttcatttgt 251
Query: 242 gttgtgctgtcaaagggattaaataagcgc 271
||||||||||||||||||||||||||||||
Sbjct: 250 gttgtgctgtcaaagggattaaataagcgc 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 670
Length adjustment: 9
Effective length of query: 262
Effective length of database: 661
Effective search space: 173182
Effective search space used: 173182
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no365_m03.g1 MSMg01no365_m03.g1 CHROMAT_FILE:
MSMg01no365_m03.g1 PHD_FILE: MSMg01no365_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:20 2005
(478 letters)
>mm_chr19_57426978_57427857
Length = 880
Score = 835 bits (432), Expect = 0.0
Identities = 468/481 (97%), Gaps = 4/481 (0%)
Strand = Plus / Plus
Query: 1 cataaaactgacattagaacattcttggcagagacgtggaggggtgtggagctcacgtat 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaaactgacgttagaacattcttggcagagacgtggaggggtgtggagctcacgtat 260
Query: 61 catttgcaacgtgtgtccccaccccccactacatctttcaggaaacctaagaaggcatct 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttgcaacgtgtgtccccatcccccactacatctttcaggaaacctaagaaggcatct 320
Query: 121 gtggactagacatgatgagatgctctgcgttaaaaggcgccagcatccttggaaggctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggactagacatgatgagatgctctgcgttaaaaggcgccagcatccttggaaggctct 380
Query: 181 ctggtggtggaagacagagctgcggttgctgttgctatggagattacctcgattacagtg 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtggtggaagagagagctgcggttgctgttgctatggagattacctcgattacagtg 440
Query: 241 cgtatgatgattctgaagtggtgtggccaggcactgggacaagagtcgagcctgcagaga 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtaggatgattctgaagtggtgtggccaggcactgggacaagagtcgagcctgcagaga 500
Query: 301 ttgtttgtaatggcagcagaagttattgtaaataattaggatgtctcgatctggcaagtt 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ttgtttgtaatggcagcagaagttattgtaaataaccaggatgtctcgatctggcaagtt 560
Query: 361 attgatcagggtgctcatggaacttggatggaatggtcagctagcctattanagcatcgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 attgatcagggtgctcatggaacttggatggaatggtcagctagcctattaaagcatcgc 620
Query: 421 tttgtctgggagcta--gagttgagt-gaggctgtatcaacagagtttctaaaactgggc 477
||||||||||||||| ||||||||| | ||||||||||||||||| ||||||| |||||
Sbjct: 621 tttgtctgggagctaaagagttgagtcg-ggctgtatcaacagagtatctaaaattgggc 679
Query: 478 a 478
|
Sbjct: 680 a 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 880
Length adjustment: 10
Effective length of query: 468
Effective length of database: 870
Effective search space: 407160
Effective search space used: 407160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
