BAC Information

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BAC

Clone NameMSMg01-366C14
Chromosome19 (Build37)
Map Location 50,578,787 - 50,788,831
singlet/doubletdoublet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream geneLOC100042924, LOC100042928
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366C14.T7 (MSMg01no366_c14.b1)MSMg01-366C14.TJ (MSMg01no366_c14.g1)
ACCAG473941AG473942
length775771
length of high quality
(start - end)		472 (76 - 547)468 (80 - 547)
definitionCHROMAT_FILE: MSMg01no366_c14.b1 PHD_FILE: MSMg01no366_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:55 2005CHROMAT_FILE: MSMg01no366_c14.g1 PHD_FILE: MSMg01no366_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,788,502 - 50,788,831)(50,578,787 - 50,579,254)
sequence
NNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTATAATTATCAATAATGATTAAAGTAAAATTCTCAGTA
CTGAATATGTGTACTGAATATGTATTAGATGATGTCTGTATCTGTTTCAT
ATTGCTATCGTCACCGGTTACCATACACTTAGAAGCTTATGTAAGAAGCA
AAATTGGGTTGGCAGCATTGCTCAGTGGGTGAAGGTGCTTTGCCACCAAC
ACGTCCCAAGCCATCACACCTGATGACCTGATTTTGATCCCTCGGACATT
GTGAAAGGAGGGACTCAAATCATACTAGTTGTCCTCTGACGTGCACTTGT
GCAAGTTGCATATTTATGCCAATACATACACACAAGTAAATAAATAACTA
GTAAAGTTATTTGAAAACAAGTGAAATTATCTTCTAGATCTGAGAAGGTC
AGAGGCCAGAAGTCTTGCATGGATTTGTCTGGTTTAAACCCAAGGTGCTG
GCAGGACTATATTTCTTCTCTGGGTTCCAGAGACCTGCGTCTGATTTTGC
CAGTTTCTAGAACTTCTCTGCACTCATGAGCATCACTTTTGCTTCTGGTT
TTAAACAACTCCTACGTCTTATTTTATTCGAGCAGCTGACTATCATCTGG
AGTCCACCAGCTCACATCCCATGACAAGAATTCGGATGGCTTCCCCATGG
AACCCCCTTTATTACAAAAAAAAAATTGCCCGGGCCCTAAAAAATTCAAG
GATTCCAACCAATGAGGGTGGTCCC

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTGTTGAAGTGTGACTC
ATGCTCAGGTTTTTGATGTATGAAAATAAGTCCTCCTCCTATAGAGAGAC
CATCGCTGTGATTGCTTCTCTACCACACGTCCCATCCTTGTGGGGTAAGG
TAAGCTTAGAGGAGTCTGCATAGCTCAGTGATTTGCCAAGCCAAGGTCTG
TTTGGAACAAGGTGAAGCATCATCTCCCACAGGTCAACTTTTGTCCAGTT
TGAATCTCGTTTGCTTCTGCTTTACTTTCCTTGCTACACCATGAAGGGCC
ATCCAGGAAAGGCTAAGGCTAGCAGGTGACCTTTAGGGAGGTGGCTAGCA
ACCATTTTTCCATGGTCTAAGATGGGTGATTTCTGAAAGGCAAGGCCCCA
AGGGACTTCATCCCAGGATTGCTTTTTGCAGCTGATATGCCTTTCCTGTC
ACTATTACCCTATGGACTCCTGAGCATTGGCTCACTGTATTGAGCAGAGG
TCCTGCAGAGCAACCTCCAGATGAACTTTCAAGAATTAATGCCATTTAAA
TGACTTAACCTTTTCCTAGAATTCCTAATTTGATGCAAAGAGTTTTTAAA
AAAAAGGTTTTAAAAAGGTTTTTATTGTTTTTGTCAAAAAATGTTTTTAT
TTGAAGTTATAAATTGAATGGGCGCCCTTCTCCTTGACATTATTTAAGGC
TTATTTTATTCTAAAACATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_c14.b1 MSMg01no366_c14.b1 CHROMAT_FILE:
MSMg01no366_c14.b1 PHD_FILE: MSMg01no366_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:55 2005
         (472 letters)



>mm_chr19_50788502_50789373
          Length = 872

 Score =  630 bits (326), Expect = 0.0
 Identities = 329/330 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgattaaagtaaaattctcagtactgaatatgtgtactgaatatgtattagatgatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aatgattaaagtaaaattctcagtactgaatatgtgtactgaatatgtattagatgatgt 271

                                                                       
Query: 61  ctgtatctgtttcatattgctatcgtcaccggttaccatacacttagaagcttatgtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctgtatctgtttcatattgctatcgtcaccggttaccatacacttagaagcttatgtaag 211

                                                                       
Query: 121 aagcaaaattgggttggcagcattgctcagtgggtgaaggtgctttgccaccaacacgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aagcaaaattgggttggcagcattgctcagtgggtgaaggtgctttgccaccaacacgtc 151

                                                                       
Query: 181 ccaagccatcacacctgatgacctgattttgatccctcggacattgtgaaaggagggact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ccaagccatcacacctgatgacctgattttgatccctcggacattgtgaaaggagggact 91

                                                                       
Query: 241 caaatcatactagttgtcctctgacgtgcacttgtgcaagttgcatatttatgccaatac 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  caaatcatacaagttgtcctctgacgtgcacttgtgcaagttgcatatttatgccaatac 31

                                         
Query: 301 atacacacaagtaaataaataactagtaaa 330
           ||||||||||||||||||||||||||||||
Sbjct: 30  atacacacaagtaaataaataactagtaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_c14.g1 MSMg01no366_c14.g1 CHROMAT_FILE:
MSMg01no366_c14.g1 PHD_FILE: MSMg01no366_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:55 2005
         (468 letters)



>mm_chr19_50578587_50579454
          Length = 868

 Score =  905 bits (468), Expect = 0.0
 Identities = 468/468 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctgttgaagtgtgactcatgctcaggtttttgatgtatgaaaataagtcctcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttctgttgaagtgtgactcatgctcaggtttttgatgtatgaaaataagtcctcctcc 260

                                                                       
Query: 61  tatagagagaccatcgctgtgattgcttctctaccacacgtcccatccttgtggggtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatagagagaccatcgctgtgattgcttctctaccacacgtcccatccttgtggggtaag 320

                                                                       
Query: 121 gtaagcttagaggagtctgcatagctcagtgatttgccaagccaaggtctgtttggaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagcttagaggagtctgcatagctcagtgatttgccaagccaaggtctgtttggaaca 380

                                                                       
Query: 181 aggtgaagcatcatctcccacaggtcaacttttgtccagtttgaatctcgtttgcttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtgaagcatcatctcccacaggtcaacttttgtccagtttgaatctcgtttgcttctg 440

                                                                       
Query: 241 ctttactttccttgctacaccatgaagggccatccaggaaaggctaaggctagcaggtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttactttccttgctacaccatgaagggccatccaggaaaggctaaggctagcaggtga 500

                                                                       
Query: 301 cctttagggaggtggctagcaaccatttttccatggtctaagatgggtgatttctgaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctttagggaggtggctagcaaccatttttccatggtctaagatgggtgatttctgaaag 560

                                                                       
Query: 361 gcaaggccccaagggacttcatcccaggattgctttttgcagctgatatgcctttcctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaaggccccaagggacttcatcccaggattgctttttgcagctgatatgcctttcctgt 620

                                                           
Query: 421 cactattaccctatggactcctgagcattggctcactgtattgagcag 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactattaccctatggactcctgagcattggctcactgtattgagcag 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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