BAC Information

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BAC

Clone NameMSMg01-366G08
Chromosome19 (Build37)
Map Location 32,912,703 - 33,117,688
singlet/doubletdoublet
Overlap genenone
Upstream gene1810073H04Rik, Asah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
Downstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366G08.T7 (MSMg01no366_g08.b1)MSMg01-366G08.TJ (MSMg01no366_g08.g1)
ACCAG474119AG474120
length791790
length of high quality
(start - end)
245 (75 - 319)342 (75 - 416)
definitionCHROMAT_FILE: MSMg01no366_g08.b1 PHD_FILE: MSMg01no366_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:14 2005CHROMAT_FILE: MSMg01no366_g08.g1 PHD_FILE: MSMg01no366_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,117,446 - 33,117,688)(32,912,703 - 32,913,040)
sequence
ACTTTCCCTTTTTTGCGTTAGCTAAACGACGCACATATTCACAAAACCGC
GGAATTCCTGGATTTCCCTATAAAACTTCTTGTGTTGGCTCGGCCATTGC
AATACAGGAGTCATTTTTACTGCGGAGGTATGAATGTATTTGTTTTCTTT
TTTATTTTATTAAACTGGGTTATATAAGGTCATTTTCATTCAAGTGGATA
ATTGCTTTGAGCATTCCCCCCTACTCCTCTTTCTCACCGTCCATCCCCCT
CCTCTCTTTCACCCTTGTTCCCCTAGAGAGTTTCACTTCTACATTGTTGT
CATATATATAGGACCACTATTAGTCAGATTACATAGCATTTGATGTTCTT
AGACTGACTTAATTTGCTTACAGTACATTATTTCCAGTGTATCTATTTTT
CCACAAATGACATAACCCCATTCATCTCTGTTTCTATTAAAATAATCTTA
CATACATCTCTCACTCTCTACTCTTTATTACCCAATTTCTACCTCTCATT
CATCTTAACCCATTTTATACCCTTTAATTTGTTACCTTAACCATTACTTT
TTCCTTGATTTACCCATTTTATTTTTTTTTTTCATATTTTTCCCTTTTTT
TATTTTCCTTTTTTCTTTCTTTCCCTTCCCTCTTTTTCTTTTCTTTTTTT
TCTATCCACCTTTATATATCATTTTTTTTCCTCTCTCTTTTTTCCCTTTT
CCACTATTTTCTTTTTTTCCCCTCCCCCTTTTTTCCTTTTCCCCCTTTTC
CTTACCCTTCATTCCCCATTTTCCCCCATTCTTCCTTTTTT
NTTTCGATGAAGTGGGAGGCCTGGCGGNCGCCTGGCTTCTAACAATAGGT
GACCTATAGAAGTTACCGCGAACATCTTTTTATTCTTTTCAGGCCTTGGG
CAGATTGTGAGTTTCACTCATATTAGAGCAGCCAGGCCACCATTCAGCCA
TTAATACCACCCAGAAACATGCCCACAGACACTCTGAGAACAATGTCTAA
CCAAACATTTGGACATCCGTGACCCAGTGGCCTTGCCACATAAAATAGCC
ATCTTACTCAAAAGCTGGCAGAATTCCTTCTGGGCAAGATTTTCTCTTTT
GTCCTACTAAGATCTTAACTGGCTGAATCACACCCTCGCTATGGCAAGCA
GTTTGCTTAAGGTACTCTGATATATATATGAATCTCATTTAGAAAATACT
TCATTGTGGAGAGATGGCTCAGTAGGTAGGGGCATGCCACTAAGGGCTAC
ATGACCCTCTCTCCCAAGCATAGGCTGGACATGGTCTTCTGTGTACCTGT
AACACCAGCATTCCTGGCGACAGATACTGTAAGAACTGGGCGCTTCTTGT
TCTGTCCTTCCAAATAATACCAACATGTAATTCTTCTCTGGTCTGCTGTG
TTCATCGAACATACCCCTTTTCATATTTTTTATTTTCCGTTTTTTTCCTT
CACTTCTCCTTTTTTTTTTTTTTTTGGCCCACGTTTTCCACCATTTTTTG
TTATACTATCAAACTTTTTTTATCAATTTTCTTTTATATCCACTTTCCTT
TTTTTTATTTATCCCCTATTTTCTTTCCTCCCCTCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_g08.b1 MSMg01no366_g08.b1 CHROMAT_FILE:
MSMg01no366_g08.b1 PHD_FILE: MSMg01no366_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:14 2005
         (245 letters)



>mm_chr19_33117246_33117890
          Length = 645

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttcttgtgttggctcggccattgcaatacaggagtcatttttactgcggaggtatgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 acttcttgtgttggctcggccattgcaatacaggagtcatttttactggggaggtatgaa 384

                                                                       
Query: 61  tgtatttgttttcttttttattttattaaactgggttatataaggtcattttcattcaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 383 tgtatttgttttcttttttattttattaaactgggttatataaggtcagtttcattcaag 324

                                                                       
Query: 121 tggataattgctttgagcattcccccctactcctctttctcaccgtccatccccctcctc 180
           |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 323 tggataattgctttaagcattcccccctactcctctttctcaccgcccatccccctcctc 264

                                                                       
Query: 181 tctttcacccttgttcccctagagagtttcacttctacattgttgtcatatatataggac 240
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcagtcacccttgttcccctagagagtttcacttctacattgttgtcatatatataggac 204

              
Query: 241 cac 243
           |||
Sbjct: 203 cac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no366_g08.g1 MSMg01no366_g08.g1 CHROMAT_FILE:
MSMg01no366_g08.g1 PHD_FILE: MSMg01no366_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:14 2005
         (342 letters)



>mm_chr19_32912503_32913244
          Length = 742

 Score =  569 bits (294), Expect = e-166
 Identities = 327/338 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttttattcttttcaggccttgggcagattgtgagtttcactcatattagagcagcca 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttttattcttttcaggccttggacagattgtgagtttcactcatattagagcagcca 260

                                                                       
Query: 61  ggccaccattcagccattaataccacccagaaacatgcccacagacactctgagaacaat 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccaccattcagccattaataccacccagaaacatgcccacagacactctgagaacaat 320

                                                                       
Query: 121 gtctaaccaaacatttggacatccgtgacccagtggccttgccacataaaatagccatct 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 321 gtctaaccaaatatttggacatccgtgacccagtggccttgccacataaaataaccatca 380

                                                                       
Query: 181 tactcaaaagctggcagaattccttctgggcaagattttctcttttgtcctactaagatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tactcaaaagctggcagaattccttctgggcaagattttctcttttgtcctactaaggtc 440

                                                                       
Query: 241 ttaactggctgaatcacaccctcgctatggcaagcagtttgcttaaggtactctgatata 300
           ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct: 441 ttaactgtctgaatcacaccctcaccatggcaagcagtttgcttaaggtactctggtata 500

                                                 
Query: 301 tatatgaatctcatttagaaaatacttcattgtggaga 338
           ||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgtgaatctcatttagaaaatacttcattgtggaga 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)