Query= MSMg01no367_f14.b1 MSMg01no367_f14.b1 CHROMAT_FILE:
MSMg01no367_f14.b1 PHD_FILE: MSMg01no367_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:29 2005
(493 letters)
>mm_chr19_21831886_21832776
Length = 891
Score = 891 bits (461), Expect = 0.0
Identities = 479/485 (98%), Gaps = 2/485 (0%)
Strand = Plus / Minus
Query: 9 ggaattcaaggccatcctggtctacagagcaagggctaggacaggcagcactacacagag 68
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ggaattcaaggccagcctggtctacagagcaagggctaggacaggcagcactacacagag 696
Query: 69 aaactgtgcaccccccacccaaaaaaaaaaccaaaccaaacaaacaaatgaaatgtttgg 128
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aaactgtgc-ccccccccccaaaaaaaaaaccaaaccaaacaaacaaatgaaatgtttgg 637
Query: 129 taagagttagaaacttatgatagcagtaagagtttgcttgaaggatttagaatattttac 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 taagagttagaaacttatgatagcagtaagagtttgcttgaaggatttagaatattttac 577
Query: 189 tacaagttgaaaaaggcacttgaaattgagagttacaaatatttggagttcaaagcttgc 248
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 576 tacaagttgaaaaaggcacttgaaattgagagttacaaatatttggtgttcaaagcttgc 517
Query: 249 tccaccacagacgaactctgtgttctggggtatgtcaagttctctttaaaacactgtaaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 516 tccaccacagacgaactctgtgttctggggtatgtcaagttctctttaaaacactgtgaa 457
Query: 309 acaacaatgtttcatgaacacttcaatatatggtaacatttcatacatggtacatgtata 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acaacaatgtttcatgaacacttcaatatatggtaacatttcatacatggtacatgtata 397
Query: 369 tttcataatataatgatttcaatatatggagacattttatgtatgatacatgaacagttc 428
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 396 tttcataatataatgatttcaatatatggagacattttatgtatgatacatg-acagttc 338
Query: 429 atacttgataatgatacttcatgctaagtgaaggcattggattgaagtaacacacaaccc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atacttgataatgatacttcatgctaagtgaaggcattggattgaagtaacacacaaccc 278
Query: 489 ttgga 493
|||||
Sbjct: 277 ttgga 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 891
Length adjustment: 10
Effective length of query: 483
Effective length of database: 881
Effective search space: 425523
Effective search space used: 425523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_f14.g1 MSMg01no367_f14.g1 CHROMAT_FILE:
MSMg01no367_f14.g1 PHD_FILE: MSMg01no367_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:29 2005
(499 letters)
>mm_chr19_21682473_21683371
Length = 899
Score = 878 bits (454), Expect = 0.0
Identities = 476/496 (95%), Gaps = 20/496 (4%)
Strand = Plus / Plus
Query: 1 cacagggaccaggcgtacatgtgttggaaagacatatatgcaggcaaaacattcatacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cacagggaccaggcgtacatgtgttggaaagacatatatgcaggcaaaacattcatacaa 280
Query: 61 taaaaatgaataacaaaaatttttaaaaggatcactaatcggctgaagaggaggaggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taaaaatgaataacaaaaatttttaaaaggatcactaatcggctgaagaggaggaggagg 340
Query: 121 aagcagcagcagctgccaccaaagggtgagggtggtggcacgcacttttaaccccagcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aagcagcagcagctgccaccaaagggtgagggtggtggcacgcacttttaaccccagcat 400
Query: 181 ttaaccccagcactcaggtggcagaggcaggtaaatcttaagtttgagtccagccttgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttaaccccagcactcaggtggcagaggcaggtaaatcttaagtttgagtccagccttgtc 460
Query: 241 tacagttcaagtttctggacaacaaaggctacacaaaaaaacacttttcccacaaaacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tacagttcaagtttctggacaacaaaggctacacaaaaaaacacttttcccacaaaacca 520
Query: 301 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaggaagagacttagttgacc 360
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 521 aaaaaaaaaaaaaaaaaa--------------------ggaggaagagacttagttgacc 560
Query: 361 tcaaatataatcaacacataatcaacagaaaagtgacttatttctgacctcagggtgcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaatataatcaacacataatcaacagaaaagtgacttatttctgacctcagggtgcta 620
Query: 421 gatcgactggttacatttttattctttcatcaaaataaacatctattaccatttatttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatcgactggttacatttttattctttcatcaaaataaacatctattaccatttatttaa 680
Query: 481 gtattacaacgccgaa 496
||||||||||||||||
Sbjct: 681 gtattacaacgccgaa 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
