Query= MSMg01no367_n23.b1 MSMg01no367_n23.b1 CHROMAT_FILE:
MSMg01no367_n23.b1 PHD_FILE: MSMg01no367_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:09 2005
(540 letters)
>mm_chr19_35301285_35302224
Length = 940
Score = 967 bits (500), Expect = 0.0
Identities = 527/536 (98%)
Strand = Plus / Plus
Query: 5 gaattcattcctagaactgctctgtagaggcctctggggtaaaggtctcctggctcaggg 64
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcattcctagaaatgctctgtagaggcctctggggtaatggtctcctggctcaggg 264
Query: 65 cttctagatagcagatactgttaggggagaacagacaagcttttgttctgaagaggaact 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 265 cttctagatagcagatactgttaggggagaacaggcaagcttttgttctgaagagtaact 324
Query: 125 cttacatactaaggcatcctgtcattttgatatcttatgacaggagtgtgttggctactt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttacatactaaggcatcctgtcattttgatatcttatgacaggagtgtgttggctactt 384
Query: 185 ttgtgtcaacttgacacaaactaaagtcatcagagacgtgggaacttctactaagaaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtgtcaacttgacacaaactaaagtcatcagagacgtgggaacttctactaagaaaat 444
Query: 245 gcattcataagataaggtaagcctttagggcattttcttaattagtgattgatgggagaa 304
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 gcattcgtaagataaggtaagcctttagggcatttccttaattagtgattgatgggagaa 504
Query: 305 ggatcaacccattattggtagtgcactcccttgcctggtggtccagagttttataagaaa 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 ggatcaacccattattggtagtgcaatcccttgcctggtggtccagagttttataagaaa 564
Query: 365 gcagactgagcaaaccatgtgcagcaagccagtaagcagcattcctccatggcctttgca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcagactgagcaaaccatgtgcagcaagccagtaagcagcattcctccatggcctttgca 624
Query: 425 tcagagcctgtctccaggttcctgccattttgagttcttgtcctgacttccttcagtgat 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 tcagagcctgtctccaggttcctgccgttttgagttcttgtcctgacttccttcagtgat 684
Query: 485 gaatagtgatgtggaagcataagctaggaaaatcctttcttgcttaacttgcttgt 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 685 gaatagtgatgtggaagcataagctaagaaaatcctttcttgcttaacttgcttgt 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_n23.g1 MSMg01no367_n23.g1 CHROMAT_FILE:
MSMg01no367_n23.g1 PHD_FILE: MSMg01no367_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:09 2005
(538 letters)
>mm_chr19_35488057_35488998
Length = 942
Score = 909 bits (470), Expect = 0.0
Identities = 485/492 (98%), Gaps = 4/492 (0%)
Strand = Plus / Minus
Query: 1 tctgcaagttaaagagagtgataaacacagcaatgctgatgagtaaggacctcattaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tctgcaagttaaagagagtgataaacacagcaatgctgatgagtaaggacctcattaaca 590
Query: 61 tgggaatcagtcaccatggaggggaagagagaagcgctgtcaatgggctgagacagaagc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tgggagtcagtcaccatggaggggaagagagaagcgctgtcaatgggctgagacagaagc 530
Query: 121 ctgaccccttctaataacatccttgatgtggttagcagtcagctgggagttttgtctggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctgaccccttctaataacatccttgatgtggttagcagtcagctgggagttttgtctggg 470
Query: 181 acaggggaactcaggcagtggcacccatgacctgtagaagcaaagtgataatg----ttc 236
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 469 acagggggactcaggcagtggcacccatgacctgtagaagcaaagtgataatgttctttc 410
Query: 237 tgaactatacagggcactaaggtatccatgtcatcttgtctcaataatcattgatggctg 296
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tgaactatacagggcactgaggtatccatgtcatcttgtctcaataatcattgatggctg 350
Query: 297 cttgacccagacctatctatccatcaggacaaagttttagctgtgacaccatgggtacac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cttgacccagacctatctatccatcaggacaaagttttagctgtgacaccatgggtacac 290
Query: 357 cagaagtaactgcagtagcaagatgatgagacaccaacccttccctctctccagctactg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cagaagtaactgcagtagcaagatgatgagacaccaacccttccctctctccagctactg 230
Query: 417 tgtgaggaaactgggggcattacacctgatctctctctctctctctctctctctctctct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tgtgaggaaactgggggcattacacctgatctctctctctctctctctctctctctctct 170
Query: 477 ctctctctctct 488
||||||||||||
Sbjct: 169 ctctctctctct 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 942
Length adjustment: 10
Effective length of query: 528
Effective length of database: 932
Effective search space: 492096
Effective search space used: 492096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
