Query= MSMg01no368_f18.b1 MSMg01no368_f18.b1 CHROMAT_FILE:
MSMg01no368_f18.b1 PHD_FILE: MSMg01no368_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:46 2005
(519 letters)
>mm_chr19_22677706_22678624
Length = 919
Score = 936 bits (484), Expect = 0.0
Identities = 508/516 (98%), Gaps = 2/516 (0%)
Strand = Plus / Minus
Query: 5 gaattctttaatttatattatctgcatcttttagattggaagaaacatgtttagtcatcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gaattctttaatttatattatctgcatcttttagattggaagaaacatgtttagtcatcc 660
Query: 65 gtgtattgctcaaaaacaaaacaaacttgagtcctcctgttgtccatgggctctgccctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gtgtattgctcaaaaacaaaacaaacttgagtcctcctgttgtccatgggctctgccctc 600
Query: 125 ctctgcccttccccatctttcacgctcatgacacattgaccttgacagagagcctcttga 184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 599 ctctgcccttccccatctttcacgctcatgacacactgaccttgacagagagcctcttga 540
Query: 185 tgacctcacattttcatttatctataaaacactcccatcatcactgagagtgggctgtag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgacctcacattttcatttatctataaaacactcccatcatcactgagagtgggctgtag 480
Query: 245 gttaaagattaatgcatctcttgagagttggggagattttcttcaaagtcatggcttagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gttaaagattaatgcatctcttgagagttggggagattttcttcaaagtcatggcttagg 420
Query: 305 tcacaaaaagtctattaaacaaatatcaccctcaggaacttagaggcagcaaatataatt 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tcacagaaagtctattaaacaaatatcaccctcaggaacttagaggcagcaaatataatt 360
Query: 365 tcttctgttccaccataactacaatgcatgctgagtagaacctgtatcactggtgacccc 424
||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 359 tctgctgttccaccatagctactatgcatgctgagtagaacctgtatcactggtgacccc 300
Query: 425 agaagtgagccccacaaactcatatcgagacatcgaatgcagaatcccttcagataatac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agaagtgagccccacaaactcatatcgagacatcgaatgcagaatcccttcagataatac 240
Query: 485 atttttcctgaaac-actgacaccacttgcctgact 519
|||||||||| ||| | |||||||||||||||||||
Sbjct: 239 atttttcctg-aactaatgacaccacttgcctgact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_f18.g1 MSMg01no368_f18.g1 CHROMAT_FILE:
MSMg01no368_f18.g1 PHD_FILE: MSMg01no368_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:47 2005
(463 letters)
>mm_chr19_22628626_22629488
Length = 863
Score = 880 bits (455), Expect = 0.0
Identities = 461/463 (99%)
Strand = Plus / Plus
Query: 1 aacatttcagcctgaatattcagcccagccaaatcttcaggctctgaattaataaactca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatttcagcctgaatattcagcccagccaaatcttcaggctctgaattaataaactca 260
Query: 61 ttccgtctgacttgattttagggtcacattgagccaaaaccaacttccggggcttgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccgtctgacttgattttagggtcacattgagccaaaaccaacttccggggcttgggag 320
Query: 121 ccttgctttgaacagaaggctgtttgcttgttcccggtgggaatacattatgctgagtga 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ccttgctttgaacagaaggctgtttgcttgttcccagtgggaatacattatgctgagtga 380
Query: 181 tggcttcctgtttgtcctggaggggcctccctggcctgaaagaagtcacaatttgggtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcttcctgtttgtcctggaggggcctccctggcctgaaagaagtcacaatttgggtca 440
Query: 241 gctctctctgcaggggccattcctgacagctttcttgggataaatgagatctgaaacatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctctctctgcaggggccattcctgacagctttcttgggataaatgagatctgaaacatc 500
Query: 301 gggctttcagtatatgaaaaggtcttggcacaaagcccccgtctctctgcagagggctct 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gggctttcagtatatgaaaaggtcttggcacaaagcccccgtctctctacagagggctct 560
Query: 361 gactttgaaaatgccctgcatgctgcagtttttccccagcccacagggactcctgctggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gactttgaaaatgccctgcatgctgcagtttttccccagcccacagggactcctgctggg 620
Query: 421 gcatcttgctaggaggtccacgtgctcccgtgctccccacgtg 463
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatcttgctaggaggtccacgtgctcccgtgctccccacgtg 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
