Query= MSMg01no369_d05.b1 MSMg01no369_d05.b1 CHROMAT_FILE:
MSMg01no369_d05.b1 PHD_FILE: MSMg01no369_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:52 2005
(305 letters)
>mm_chr19_35119570_35120275
Length = 706
Score = 505 bits (261), Expect = e-147
Identities = 285/293 (97%), Gaps = 3/293 (1%)
Strand = Plus / Plus
Query: 15 gaattcctgtgctatatatactgaggtctttgggtacaagtctattcca-gcagaatcgc 73
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 215 gaattcctgtgctatatatactgaggtctttgggtacaagtctat-ccaagcagaatcgc 273
Query: 74 tacacagggctgtggatgaggtttatactaagctgaaaaatgttttgggagcacatagat 133
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 274 tacacagggctgtggatgaggtttacactaagctgaaaaatgttttgggggcacatagat 333
Query: 134 gagagggataaaatccccttgggaggaatgcttctcagaggagggaggactcagtgcatt 193
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 334 gagagggataaaatccccttgggaggaatgcttctcagagaagggaggactcagtgcatt 393
Query: 194 ttggaacataaaagacatcaaggg-gatgaggaggttatgtagagactccgattaagact 252
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 394 ttggaacataaaagacatcaaggttgatgaggaggttatgtagagacgccgattaagact 453
Query: 253 gaggctgtactgtttggttatcacaggacatggagtgatgttttgatgggtct 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gaggctgtactgtttggttatcacaggacatggagtgatgttttgatgggtct 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 706
Length adjustment: 9
Effective length of query: 296
Effective length of database: 697
Effective search space: 206312
Effective search space used: 206312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_d05.g1 MSMg01no369_d05.g1 CHROMAT_FILE:
MSMg01no369_d05.g1 PHD_FILE: MSMg01no369_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:52 2005
(493 letters)
>mm_chr19_35300796_35301688
Length = 893
Score = 915 bits (473), Expect = 0.0
Identities = 488/493 (98%)
Strand = Plus / Minus
Query: 1 aggtaggtctttgcaagttcaatgtggggccatcttctcatcctcatctcatgagggttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aggtaggtctttgcaagttcaatgtggggccatcttctcatcctcatctcatgagggttc 634
Query: 61 cagcctctttaatgcaaagtagtattccaaaaaaggtaagcctgagttaagaggtaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cagcctctttaatgcaaagtagtattccaaaaaaggtaagcctgagttaagaggtaaaaa 574
Query: 121 accatagtgtcagatatgcccccaaatctgttgtcatgtctcctaaggagacatcctttt 180
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 573 accatagtgtcagatatgcccccaaatctgttgtcatgtctgctaagaagacatcctttt 514
Query: 181 caatgaccgttcaagttgataccagatatttaagagacagaagccttctaaaggaacaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 caatgaccgttcaagttgataccagatatttaagagacagaagccttctaaaggaacaac 454
Query: 241 tccagccacagccaaagtagtaaataaattattcttacaaagaaatttttccttaataaa 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 453 tccagccacagccaaagtagtaaataaattattcttacaaagaaatttctccttaataaa 394
Query: 301 ttatcttacttgtaaatgtgaacattcataaaatatatattttgatgtcattgcaaaaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 393 ttatcttacttgtaaatgtgaacattcataaaatatatattttgatgtcactgcaaaaaa 334
Query: 361 taagaacaaacatctatccatataactaacttaatctggacaaacaacccaactagataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 taagaacaaacatctatccatataactaacttaatctggacaaacaacccaactagataa 274
Query: 421 gtcaagtcccataagacttaattgtgcttacctcatgggtaattaaggcaagtgtttaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtcaagtcccataagacttaattgtgcttacctcatgggtaattaaggcaagtgtttaaa 214
Query: 481 tagcttaaactag 493
||| |||||||||
Sbjct: 213 tagtttaaactag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
