BAC Information

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BAC

Clone NameMSMg01-369I20
Chromosome19 (Build37)
Map Location 52,299,684 - 52,300,000
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936
Downstream geneIns1, LOC100043450, Xpnpep1, LOC668545, LOC674277, Add3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369I20.T7 (MSMg01no369_i20.b1)MSMg01-369I20.TJ (MSMg01no369_i20.g1)
ACCAG476510AG476511
length743744
length of high quality
(start - end)
467 (46 - 512)422 (74 - 495)
definitionCHROMAT_FILE: MSMg01no369_i20.b1 PHD_FILE: MSMg01no369_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:18 2005CHROMAT_FILE: MSMg01no369_i20.g1 PHD_FILE: MSMg01no369_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAATCCGCTAGGGAATTTCACGTCTGATGACCTTTCTTCTGTGG
CTGTGGTTCCTCGTTTCTGTTTTATAAAGATTTTTATCCAAATTGCATAA
AGGGAATGTTTTTCTTTTTTAAAATATTTTTATTAGGTATTTTCCTCATT
TACATTTCCAATGCCATCCCAAAAGTCCCCCATACCCCATCCCCCACTCC
CCTACCGACCCACTCCCACTTTTTGCCCTGGCATTCCCCTGTACTGGGGC
ATATAAAGTTTGCAAGTCCAATGGGCCTCTTTTTCCAGTGATGGCCGACT
TTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTC
ATAATGCTGTTGCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTA
CTTTCTCTAGCTCCTCCATTGGGGTCCCTGTGATCCATCCAATAGCTGAC
TGTGAACATTCACTTCTGTGTTTGCTAGAACCCGGCATAGTCTCACAATT
AAAGAGCTTTATTCTGGGTCCTTTTTTCATAATCCTTGTTTTGTGTTGTA
AAGGTTGTCTTTTTTTGAATTCTGAATTATGGGAGGGCACCCCTGTTTTA
TGCCTTTTACGTTCTAATATTTTTTTTTCCCCTTTAATATTTCTCACGGT
TGTGTCTTTGTCTAACACTTTTTTTGTTTTTTTTCCGCCCCCN
CCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCAT
GAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTC
CTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCC
TGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATC
TCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTT
GATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTG
AGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGG
AATGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAG
GCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGT
GGCCAGTTGTCTGGAGTCTAAGATGTCTCATCCTCTTAAGCTCTGTGGCT
CTTGTTTGTAAAGTGTTTGTTTTGTCTGGACCTCATGATGGTTGCTCCCC
CTTTTTTTCTTGTGATTCTTCTTTGCCTCGTCCCTTAAATGTTTGGTCCC
TCCTGTATTTTTTCTCGGTTTCTTTCTTGTACTCCGTTTTTTCCCCGGTT
TTCTTTTTTTTCTTATAACGGCTTTCTTTTTTTTTTTCTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_i20.b1 MSMg01no369_i20.b1 CHROMAT_FILE:
MSMg01no369_i20.b1 PHD_FILE: MSMg01no369_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:18 2005
         (467 letters)



>mm_chr19_52299684_52300550
          Length = 867

 Score =  499 bits (258), Expect = e-145
 Identities = 300/322 (93%), Gaps = 14/322 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaatccgctagggaatttcacgtctgatgacctttcttctgtggctgtggttc 64
           |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 317 gaatcctcaacccgccagggaatttcacgtctgatgacctttcttctgtggctgtgcttc 258

                                                                       
Query: 65  ctcgtttctgttttataaagatttttatccaaattgcataaagggaatgtttttcttttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctcgtttctgttttataaagatttttatccaaattgcataaagggaatgtttttcttttt 198

                                                                       
Query: 125 taaaatatttttattaggtattttcctcatttacatttccaatgccatcccaaaagtccc 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttaaatatttttattaggtattttcctcatttacatttccaatgccatcccaaaagtccc 138

                                                                       
Query: 185 ccataccccatcccccactcccctaccgacccactcccactttttgccctggcattcccc 244
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 137 ccataccccatcccccactcccctacccacccactcccacttttggccctggcattcccc 78

                                                                       
Query: 245 tgtactggggcatataaagtttgcaagtccaatgggcctctttttccagtgatggccgac 304
           ||     |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 77  tg-----gggcatataaagtttgcaagtccaatgggcctctctttccagtgatggccgac 23

                                 
Query: 305 t---------tttgatacatat 317
           |         ||||||||||||
Sbjct: 22  taggccatcttttgatacatat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)