BAC Information

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BAC

Clone NameMSMg01-369K08
Chromosome19 (Build37)
Map Location 18,348,078 - 18,348,440
singlet/doubletsinglet
Overlap genenone
Upstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369K08.T7 (MSMg01no369_k08.b1)MSMg01-369K08.TJ (MSMg01no369_k08.g1)
ACCAG476581AG476582
length797788
length of high quality
(start - end)
284 (29 - 312)363 (76 - 438)
definitionCHROMAT_FILE: MSMg01no369_k08.b1 PHD_FILE: MSMg01no369_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:26 2005CHROMAT_FILE: MSMg01no369_k08.g1 PHD_FILE: MSMg01no369_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCGCTATACGACTCACTATATCTAGAGGATCCGCGGAATTCTCCTTAT
TTCCGTACCTCATTTGAAAAATTGGATTATGTAGGGTTATGATATTTAGT
TTCTTGAGTTTTTTTTATATATTTTGGATATTAGTCCTCTATTGTATGTA
GAGTTAGTAAAACTCTTTTCCCATTCTCTGGGCTGTCACTTTATTTTATT
GATGCTGTCCTTTACCTTACAGAAGCTTTTCAACTTTATGAGATAATATT
TATTAATTGTTAATCTTAGTGCCTGTGCTGTCCATTTTGTGTTCAAAACC
TCTTCTGTGCTTTTGTATTCAAGTCTATCCCCCTCTTCCTCTTCTATCAG
ATTCAGTATATCTGTTTTTTATGTTGAGATCTTTGATCCATTTGAGCTTG
ACTTTAGTGTTTTGTGATAACTATGGATTTATTTGCATTCTTCTACATGC
TTGTATCCATTTTGTTTTTCTTTATTTGTTGAACATGCTTCTTGCTTTGC
TTACTTTTTTCATCATTTAATTACTAACATTTCCTTACCTGTCTCTCTCT
CTTTTATTTTTTTATTGTTTTTCTTTTTGTTTTTTTCTACTTTTTTTTTA
CTTTATTTCCTCTGTCTTCTTTTTTAACTTTTTATTTTTTTTCTTATTTT
GTTCTCATATTTCTTCTCTTCTCCTCTTTCTCCCCCTCTCCCTCTCTTTT
CTCTTTTTTCTTTTTCCTCTCTTTTTGTATTCTTTCTCTTCTCATTCGTT
TCTCCTCTCATCCTTTTATGTTTATTTCTTCTTCTCCTCCCTCTCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCCTACTTACAGGGAGGAGAATGGA
GCTGACTTCTCCATTCTTATGGAATGCAGCAAATACTGGCACTTCAGGCA
AGTTATATTCTGGTAATATGTGTATTAGTTTTACAATAACAATTTTAATG
CTTCGCCAAGAGATGGAAAAATTTATGTTGGACACACTTGTAGCTTCAAT
TGCACATTGCAAAAGACTCTCTGGGGTCTACACAGGGACATATGAAGCTT
CATAAGACAGCCCATGTGTAATTTTTTCTCGTAATCCCCCTGTTTCCCTT
GTGGGGATTTTCAGAAACTCTGAGGAAAGAGGCCATAATTCTGTCAACAC
CATACACCACAGGAGCAGGCTTGGGTCTTGATCCCTGGAAGCTGTGCAAT
GAAGCTTGAATCACAATGTTGTGGCCAGTGTTGAATCTGTGCATTGTTCC
ACAAGAGTCATTGTCCCTAGTAGATGCCTCAGAAGTCAGATCCTTATTTT
TTAATGATTTTCTGTGAATACCTCAGATGTCCAGTATATGACAAAAGAAT
CATTCCCTGATAAATCCATGAGCTTTAACTCAAATTTGCTTCCACCTCTC
TCCCCATCATGTATTTTTTTTATATTTATATTACGCGCTTCAACTTTATC
TGGCCTCTTTCCCTCCTTTCTCCTTAATTGTGCCGAATTAACGATTTCTC
TCCCTTCTCGCCTTCTTACACATTTTTATTCCTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_k08.g1 MSMg01no369_k08.g1 CHROMAT_FILE:
MSMg01no369_k08.g1 PHD_FILE: MSMg01no369_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:26 2005
         (363 letters)



>mm_chr19_18347878_18348640
          Length = 763

 Score =  671 bits (347), Expect = 0.0
 Identities = 359/367 (97%), Gaps = 8/367 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctacttacagggaggagaatggagctgacttctccattcttatggaatgcagcaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcctacttacagggaggagaatggagctgacttctccattcttatggaatgcagcaaata 504

                                                                       
Query: 61  ctggcacttcaggcaagttatattctggtaatatgtgtattagttttacaataacaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctggcacttcaggcaagttatattctggtaatatgtgtattagttttacaataacaattt 444

                                                                       
Query: 121 taatgcttcgccaagagatggaaaaatttatgttggacacacttgtagcttcaattgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taatgcttcgccaagagatggaaaaatttatgttggacacacttgtagcttcaattgcac 384

                                                                       
Query: 181 attgcaaaagactctctggggtctacacagggacatatgaagcttcataagacagcccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attgcaaaagactctctggggtctacacagggacatatgaagcttcataagacagcccat 324

                                                                       
Query: 241 gtgtaattttt----tctcgtaatccccctgtttcccttgtggggattttcagaaactct 296
           ||||||    |    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtgtaa----tgccctctcgtaatccccctgtttcccttgtggggattttcagaaactct 268

                                                                       
Query: 297 gaggaaagaggccataattctgtcaacaccatacaccacaggagcaggcttgggtcttga 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaggaaagaggccataattctgtcaacaccatacaccacaggagcaggcttgggtcttga 208

                  
Query: 357 tccctgg 363
           |||||||
Sbjct: 207 tccctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)