BAC Information

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BAC

Clone NameMSMg01-370J17
Chromosome19 (Build37)
Map Location 57,940,845 - 58,110,109
singlet/doubletdoublet
Overlap geneAtrnl1
Upstream geneTdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038
Downstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370J17.T7 (MSMg01no370_j17.b1)MSMg01-370J17.TJ (MSMg01no370_j17.g1)
ACCAG477314AG477315
length783792
length of high quality
(start - end)		420 (39 - 458)395 (67 - 461)
definitionCHROMAT_FILE: MSMg01no370_j17.b1 PHD_FILE: MSMg01no370_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:43 2005CHROMAT_FILE: MSMg01no370_j17.g1 PHD_FILE: MSMg01no370_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,940,845 - 57,941,260)(58,109,715 - 58,110,109)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
CTCAGATACATCAATGGAAAGCACACGGCACAACACAGTAGCAATAGAAC
GTGAAGCCAGTATGTGTAGTGCCTGTAACCTAGCACTGGGCACGCTTTGA
CAGAGGCCTAGCAAGTACAAGGGCTCCTTAGCTACATAAATAAGTGGTCT
TCCCTCAAACATGAATAAAAAATTGAGCATTATATGGAAATGCCTCTGCT
ATCAAGCAGGCCACTGGAAAAAAATCTAGACACAAAACAATGTCATTCTG
AGAAATTCTTCATAAATTACCTTACTTTATTATTATTTATGAATACTTTG
TACATTTTGGTGTGTGTGTTTAGGCTGTGGTGATCATTCAAGAGAGCTCA
GCACTTTGGTTTTGAGATTGGTTTCCCACTGAACCTCAGCCCACTGGTGC
CTCTCTGAGCTCCTGCAGTGCTCCCTGAGCTCCTGAAGTGCTCCCTGAGG
TCCTGCAGTGCTCCTGAACTCCCTGCATACCCCCTGAAGCTCTGCAGGGG
TCCCGAAGTCCTGCAGTGCCTCTGAACTCCGGCAATGGCCCTTGAAATCC
TGAGACCCCGTAGGGGTCCCTGATATCCCGGACGGCCTCCTGTAATCCTT
CGGGGTTCTTTAGGTCTGGATGGGTTTTTGACCCTCGCGGCGTCCCTGAG
ATTCGCTGAGGCTCTCGGCCTTTTACTGCTCTTGAACCTCCACAGGTTCC
GCTTTTCGATGTCCCTTTTTCCCTCTCTCCTCC

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACGGGACCAGCAAATTTCGGAATTCCAGATCCC
CAAGTCAGATTCATGGGCTTCGTGGTTGGTCTTGAAAACGGTGAGATTGC
AAAGTGTGTTCTTTACTTACTGGCTTCCCTCGCATGAAATGATAAACAGA
ACAAATTCCCTAGCTGGCTCCATTCAGTAGGAGAACTCACAGTGACAAAA
TAAATTAAGCTGATGGGGAGCCTCAGAAGCTGGGCTGAACCATCCTGGAA
GTCAATTCAGAGACTGCCTGAGGGAACAGGGAAAGGAAGAAGACAGCATT
TACAAAGTGGCCCGATGCTCTGAAGGACCAGACTGTCAATCATTTCACAC
CATAGCATTTCCCTTTGAGGAAACACCTCCATGCATCCCTGTTCTTATTA
CATATATGCACACGTACAAGACCATTCGTGTATGCTGAAGACTCAAATCT
GTAGAAGTGTGGGTTGCTTAATTGGGCCCTGTTTCAACCTCCTGATGGCC
CCCCCCCCTGATACCCAATTTTCTTCTCTCTGTTATCCACCTCTTTTTAT
TTTTCTTTTCTCGTATTCTCCCCCTCCCCTCTCTTTTCCATTTCCACCCT
CTCCTCCCTTTCTCTTATTTCTCCCCCACCCCCGCCAATCCCTCTTTCTT
TTCCCTCCTCTTCTCCCCCCTTTTTCTTTCCTTTCTCCCCCACTTTTTTA
TTTCTCTTCCCTTTTATCCCCTTTTCTCCCTTTTCTCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_j17.b1 MSMg01no370_j17.b1 CHROMAT_FILE:
MSMg01no370_j17.b1 PHD_FILE: MSMg01no370_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:43 2005
         (420 letters)



>mm_chr19_57940641_57941460
          Length = 820

 Score =  774 bits (400), Expect = 0.0
 Identities = 412/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctcagatacatcaatggaaagcacacggcacaacacagtagcaatagaacgt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattctcctcagatacatcaatggaaagcacacggcacaacacagtagcaatagaactt 264

                                                                       
Query: 65  gaagccagtatgtgtagtgcctgtaacctagcactgggcacgctttgacagaggcctagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagccagtatgtgtagtgcctgtaacctagcactgggcacgctttgacagaggcctagc 324

                                                                       
Query: 125 aagtacaagggctccttagctacataaataagtggtcttccctcaaacatgaataaaaaa 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtacaagagctccttagctacataaataagtggtcttccctcaaacatgaataaaaaa 384

                                                                       
Query: 185 ttgagcattatatggaaatgcctctgctatcaagcaggccactggaaaaaaatctagaca 244
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgagcgttatatgaaaatgcctctgctatcaagcaggccactggaaaaaaatctagaca 444

                                                                       
Query: 245 caaaacaatgtcattctgagaaattcttcataaattaccttactttattattatttatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaacaatgtcattctgagaaattcttcataaattaccttactttattattatttatga 504

                                                                       
Query: 305 atactttgtacattttggtgtgtgtgtttaggctgtggtgatcattcaagagagctcagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atactttgtacattttggtgtgtgtgtttaggctgtggtgatcattcaagagagctcagc 564

                                                                   
Query: 365 actttggttttgagattggtttcccactgaacctcagcccactggtgcctctctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actttggttttgagattggtttcccactgaacctcagcccactggtgcctctctga 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_j17.g1 MSMg01no370_j17.g1 CHROMAT_FILE:
MSMg01no370_j17.g1 PHD_FILE: MSMg01no370_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:43 2005
         (395 letters)



>mm_chr19_58109515_58110309
          Length = 795

 Score =  764 bits (395), Expect = 0.0
 Identities = 395/395 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacgggaccagcaaatttcggaattccagatccccaagtcagattcatgggcttcgtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cacgggaccagcaaatttcggaattccagatccccaagtcagattcatgggcttcgtggt 536

                                                                       
Query: 61  tggtcttgaaaacggtgagattgcaaagtgtgttctttacttactggcttccctcgcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tggtcttgaaaacggtgagattgcaaagtgtgttctttacttactggcttccctcgcatg 476

                                                                       
Query: 121 aaatgataaacagaacaaattccctagctggctccattcagtaggagaactcacagtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaatgataaacagaacaaattccctagctggctccattcagtaggagaactcacagtgac 416

                                                                       
Query: 181 aaaataaattaagctgatggggagcctcagaagctgggctgaaccatcctggaagtcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaaataaattaagctgatggggagcctcagaagctgggctgaaccatcctggaagtcaat 356

                                                                       
Query: 241 tcagagactgcctgagggaacagggaaaggaagaagacagcatttacaaagtggcccgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcagagactgcctgagggaacagggaaaggaagaagacagcatttacaaagtggcccgat 296

                                                                       
Query: 301 gctctgaaggaccagactgtcaatcatttcacaccatagcatttccctttgaggaaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gctctgaaggaccagactgtcaatcatttcacaccatagcatttccctttgaggaaacac 236

                                              
Query: 361 ctccatgcatccctgttcttattacatatatgcac 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ctccatgcatccctgttcttattacatatatgcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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