BAC Information

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BAC

Clone NameMSMg01-370P07
Chromosome19 (Build37)
Map Location 29,482,612 - 29,482,907
singlet/doubletsinglet
Overlap genenone
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274
Downstream genePdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370P07.T7 (MSMg01no370_p07.b1)MSMg01-370P07.TJ (MSMg01no370_p07.g1)
ACCAG477579AG477580
length778840
length of high quality
(start - end)
403 (41 - 443)282 (73 - 354)
definitionCHROMAT_FILE: MSMg01no370_p07.b1 PHD_FILE: MSMg01no370_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:10 2005CHROMAT_FILE: MSMg01no370_p07.g1 PHD_FILE: MSMg01no370_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCTAATCTCCTTCTAAAAGGTGAATGTCATTGCAATAACCAAACTTGGG
CACAACAACAACAACGACAAAAAGCTACAATCTTGCTAAGGACTAGCATC
ACCTTGGAAAGGGGATCCTGAGGAAGGGGTGTTTGGGAGCCTCGAAAGAA
AGACTCAAAGTCAGTGGACAGGTTGACAGCTCTGTAGTCTGCTCTTTCTT
GCAAGATAAAAAATTCTTTTTTTTAAATTTTTATTAGGTATTTTCCTCAT
TTACATTTCCAATGCTATCCCAAAAGTCCCCCATGCCCACCCCCCCACTC
CCCTACCCACCCACTCCCCCTTTTTGGTCCTGGCGTTCCCCTGTACTGGG
GCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGA
CTATGTCATCTTTTGATACACATGCAGCTAGAGACAAGATCTCCGGTTGA
CTGGTTACATTATACTGTCGCTCTCCCCATACGGTTGCCGTTTACCTTTA
TTCCCTGTGTTGTCTTTCTTACTCCTCTCTCTGGTCCCGCCCGTATATCC
ATCTATTTTTTACCTCTTCCGGATTGCTTTTTTGCTCTTCTTTATACCGT
TTATACATATTCCCCCTCTCTCTCACCTATCTGAAAATTTCTTTCATTAT
TCTGTGATTTATCCTTCGTATGTGCAACCCCATTTCCCTCCTTTTTTCCA
TTTTCCCCTTTTCCCTCCTCCTCTTCCG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCAGGATCCCCACTGAAGGAGGGAGG
TGGGGGAAAGGGTAGACTGAAGCTCTGTCCAAAGCAGCTGAGATGTTCAT
TTCAGGACCCAAGTAGAGGTTTAGCTCATTCACAGACAAGAGCTCTAAAA
GCAAAGGGTGGGGCTTTATGAAGTACTTGCCCCCTCTGCACCGTGAACAG
AGAATAACTAAGGCTCTGACTCCTGGCCAAAAGGCAAGTTACTGAACTCA
AAATTGTCAAATTTAAGTCAGATCTCCTTCCCCCAGAAAGGCCTCTTCAG
AGCGGGTGTAGGGGGGCTGTTCCCTCCCCCTCTTTCCCGTTCTTATTTTT
TTTACCTTATCCCCCCCCCACCCCCCTTTTCCCTTTTCTCTTCTCTTTTT
TTTCTTCCTCCCCCCCTCTTTCGTCACTCCATTTCTATTTTTTTTCCCTC
CCTTTTCCCCCCCATTTTCCTATCTTCCTTCTTTTCCCTTTTTATCCTCT
CTTCTATTTTTTCTCCCCTCCCTCCTCTTCTTCTTTTTATCTTGCTTCCC
CTTTCAGCAGCTTTTTTCTCTATTCTTTCTCTTTCTACTTTTCCTCCCCC
CTCTCCTCTTCTTTTTGCATCCCTTCACTTATTTATTCCCCTTTTTTCAC
TCTTACTCTTTGTCTCACCCTCAATTCATCTACCTTCTATTATCTTCTCT
TTCTCCCCGATATTTTATTCTGCCCTCCCTTCTCTTTTAATATGCATCCA
TTCCTCTCAATTCCTCCCTTTCTACCTTATTCCTCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_p07.g1 MSMg01no370_p07.g1 CHROMAT_FILE:
MSMg01no370_p07.g1 PHD_FILE: MSMg01no370_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:10 2005
         (282 letters)



>mm_chr19_29482548_29483230
          Length = 683

 Score =  503 bits (260), Expect = e-147
 Identities = 281/296 (94%), Gaps = 14/296 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcaggatccccactgaaggagggaggtgggggaaagggtagactgaagctctgtccaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 360 catcaggatccccactgaaggagggaggtggggggaagggtagactgaagctctgtccaa 301

                                                                       
Query: 61  agcagctgagatgttcatttcaggacccaagtagagg-tttagctcattcacagacaaga 119
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 300 agcagctgagatgttcatttcaggacccaagtagaggttttagctcattcacagacaaga 241

                                                                       
Query: 120 gctctaaaagcaaagggtggggctttatgaagtacttgc-------------cccctctg 166
           |||||||||||||||||||||||||||||||||||||||             ||||||||
Sbjct: 240 gctctaaaagcaaagggtggggctttatgaagtacttgccactccaacttcacccctctg 181

                                                                       
Query: 167 caccgtgaacagagaataactaaggctctgactcctggccaaaaggcaagttactgaact 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 caccgtgaacagagaataactaaggctctgactcctggccaaaaggcaagttactgaact 121

                                                                   
Query: 227 caaaattgtcaaatttaagtcagatctccttcccccagaaaggcctcttcagagcg 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 caaaattgtcaaatttaagtcagatctccttcccccagaaaggcctcttcagagcg 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space:   184002
Effective search space used:   184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)