BAC Information

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BAC

Clone NameMSMg01-371G03
Chromosome19 (Build37)
Map Location 25,697,707 - 25,698,064
singlet/doubletsinglet
Overlap geneDmrt3
Upstream geneE030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1
Downstream geneDmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857, Smarca2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371G03.T7 (MSMg01no371_g03.b1)MSMg01-371G03.TJ (MSMg01no371_g03.g1)
ACCAG477903AG477904
length775802
length of high quality
(start - end)
249 (72 - 320)358 (74 - 431)
definitionCHROMAT_FILE: MSMg01no371_g03.b1 PHD_FILE: MSMg01no371_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:48 2005CHROMAT_FILE: MSMg01no371_g03.g1 PHD_FILE: MSMg01no371_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATACTGACCCAGTTTCACAGAAGGAAAA
GTGAATAAGAATTTAAAAAAAAAAAAAAAAAACCAGTGTGGTGGTTTGAA
TAAGAATGGCCCCCATAGGCTGATATATTTGGATGTTTAATCACCAAGAA
GTAGCATTATTTAAGAAGGATTGGTGGGTGTGGCCTTTGTTGGAGTGGGT
GTGGCCTTGTTGGAAAGGGTGTGGCCTTGTTGGAGTAGGTGTGACTTTGT
TGAAGGAAGTATGTCACTATGTTTTTTCTTGGAGATTTCAAATACCTCAG
TGTAGGCTCAGTGTGGATCTCTCTCTCCCTGCTCATGGATCAGGTGTGGC
TCTCAGCTACTTCTCCAGCACACACACCTGTCTGCCTGCCTGCTGCCATG
CTCTCTACCGTGAGGATATTGGACTAAACCTCTGAACCAGCCCCATCGAA
ATGCTTTCTTTAATAACAGCTGCCTTGGCTGAGGTGTCTCCTCACATCTT
TATACTGTGTATATATATACCCTCTTTATCCGCATTTCATTGTCTTGCTC
GTATTTTCCTGCCTTATTTTTCTTTTTTTCTACCAACTTATTTCTCTTTC
CTCTCCTTTTTTGCCGTTTTTTTTCGACTCCCATTATTCCTTGATTCATC
TATTTTTCTTGCCATATATCTTTTTCTTTTTTTACCATTTCTTCAATATT
CCTCTTTTTCCTTCTTTAACTTATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCAGGATCCGCGGAATT
CTCTTTTACTTTACCANTACGAGAGTACTATGTCACTGAACATTACGGGT
TGAATTTAGGGAGTAAAGCTGACCCCCCCCCCAACTAACCCCCCCCCCAC
TGGCCCGGCCTTCCCAGGGGTCCTCAGCTTTAAACTCATTTACAGCATTC
AGCACTAAATCCACAGAGCAGAGCTATTTGGCATTTTCCAGTGGAGTGCA
GGGAATTAAATAAGTTATGTTTTTATTGCTAATGTATAGACTATCAAGCA
CAGTCACTTTGTCAAACAGGAGTTTAGAGTATACAGTATTAGTGAACTCT
CCTGAAAGGGGAGGGGGGACGTCCAGGGTTCCAACACACATAAAATGTCA
CCTGGCAACACCCATAGGTACATTTTACGATGACGCGTTGAGTATTCTAG
AATCCGAGGAGTCAGACCTCTCGTCATAGTCATCCTCTGTGTAGATGGAC
TGCTTCGTCACGATTGGACTACCGTCGTCAGGGATGGACATCCTAAGGTC
CTCGTTGGCGCTTTACGACAGCACGTTTTATCTTCCGATAATGCTACCGC
TAATACTTGGCAATGGGACTGACCTACTTGTTACTTTATCGAGCAAGGCT
TGTCGCATTCGCCTCGTTTATCTTACTTGGGCGACTCTTTCATTTAATTC
ACTGTACTCTAACTCGGATTCCGCGCCCCACACTAACCTCACCAAAATTA
TTTATGTTACAACCGCAATTTTATCCATTTAAATCACATCCCTTTTTCCG
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_g03.g1 MSMg01no371_g03.g1 CHROMAT_FILE:
MSMg01no371_g03.g1 PHD_FILE: MSMg01no371_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:48 2005
         (358 letters)



>mm_chr19_25697506_25698264
          Length = 759

 Score =  590 bits (305), Expect = e-173
 Identities = 346/361 (95%), Gaps = 7/361 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   gtactatgtcactgaacattacgggttgaatttagggagtaaagctgaccccccccccaa 61
           |||||||| ||||||||||| |||||||||||||||||||||||||||  |||||| |||
Sbjct: 559 gtactatgccactgaacattccgggttgaatttagggagtaaagctga--cccccctcaa 502

                                                                       
Query: 62  cta--accccccc-cccactggcccggccttcccaggg-gtcctcagctttaaactcatt 117
           |||  |||||||| | |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 501 ctagcacccccccacacactggcccggccttccc-gggcgtcctcagctttaaactcatt 443

                                                                       
Query: 118 tacagcattcagcactaaatccacagagcagagctatttggcattttccagtggagtgca 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tacagcattcagcactaaatccacagagcagagctatttggcattttccagtggagtgca 383

                                                                       
Query: 178 gggaattaaataagttatgtttttattgctaatgtatagactatcaagcacagtcacttt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gggaattaaataagttatgtttttattgctaatgtatagactatcaagcacagtcacttt 323

                                                                       
Query: 238 gtcaaacaggagtttagagtatacagtattagtgaactctcctgaaaggggaggggggac 297
           ||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 322 gtcaaacaggaggcaagagtatacagtattagtggactctcctgaaaggggaggggggac 263

                                                                       
Query: 298 gtccagggttccaacacacataaaatgtcacctggcaacacccataggtacattttacga 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtccagggttccaacacacataaaatgtcacctggcaacacccataggtacattttacga 203

            
Query: 358 t 358
           |
Sbjct: 202 t 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 759
Length adjustment: 9
Effective length of query: 349
Effective length of database: 750
Effective search space:   261750
Effective search space used:   261750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)