Query= MSMg01no371_k08.b1 MSMg01no371_k08.b1 CHROMAT_FILE:
MSMg01no371_k08.b1 PHD_FILE: MSMg01no371_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:10 2005
(536 letters)
>mm_chr19_36863761_36864696
Length = 936
Score = 975 bits (504), Expect = 0.0
Identities = 525/532 (98%)
Strand = Plus / Plus
Query: 1 ttggctcctctagaacatgactgcctgcacactgccatgttttctaccatgatgataatg 60
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggctcctccagaacatcactgcctgcacactgccatgttttctaccatgatgataatg 260
Query: 61 ggctaaacctctgaaactgtagaccagttaaaagttttcctttctaagagttgccatagt 120
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ggctaaacctctggaactgtagaccagttaaaggttttcctttctaagagttgccatagt 320
Query: 121 catggtgtctcttcacagcaatgaaaccccaactgagaaagacagtggttatgcccaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggtgtctcttcacagcaatgaaaccccaactgagaaagacagtggttatgcccaaga 380
Query: 181 caattgacccaataaagagggagaagaaagagccagagtgcaactctaccaggacgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caattgacccaataaagagggagaagaaagagccagagtgcaactctaccaggacgtgtg 440
Query: 241 ccacagtggtgaagaccaggagatgccctggttcccctgaacagttacttggctactctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacagtggtgaagaccaggagatgccctggttcccctgaacagttacttggctactctg 500
Query: 301 tgcctcagttttctctcctttaaaatggagcaccctactgcctactgtagaacgctaagt 360
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 tgcctcagttttctctcctctaaaatggagcatcctactgcctactgtagaacgctaagt 560
Query: 361 ataagaaaccctgctgcatagcagaaggaagtgtttgctaaatgttctctttctagttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataagaaaccctgctgcatagcagaaggaagtgtttgctaaatgttctctttctagttct 620
Query: 421 ggaggttattcaacctccacaggctgtcaccatgtgggcagatacagaggccaaaggcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaggttattcaacctccacaggctgtcaccatgtgggcagatacagaggccaaaggcac 680
Query: 481 tgctgggctgctcgctgtgttctctgaaagggtctcctcccactcacatcct 532
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctgggctgctctctgtgttctctgaaagggtctcctcccactcacatcct 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_k08.g1 MSMg01no371_k08.g1 CHROMAT_FILE:
MSMg01no371_k08.g1 PHD_FILE: MSMg01no371_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:10 2005
(391 letters)
>mm_chr19_37039128_37039918
Length = 791
Score = 667 bits (345), Expect = 0.0
Identities = 375/395 (94%), Gaps = 18/395 (4%)
Strand = Plus / Minus
Query: 5 gaattcacataaactgtctaatgactggtgctttcttatatctggtagatcaatcagcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaattcacataaactgtctaatgactggtgctttcttatatctggtagatcaatcagcat 347
Query: 65 tctcagaggtgaggatctgttcttagatgaaaggaaagaaagtctgtactatatactata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tctcagaggtgaggatctgttcttagatgaaaggaaagaaagtctgtactatatactata 287
Query: 125 gtcatttatttaaaatgctctctgagctaagatttaatcctaaaagactcaccatccacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtcatttatttaaaatgctctctgagctaagatttaatcctaaaagactcaccatccacc 227
Query: 185 acccacgcttttcttttccc---------------ctctgaggatcacagccaggcagga 229
|||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 226 acccacgcttttcttttcccctctccttttttccactctgaggatcacagccaggcagga 167
Query: 230 tctcgtacatgctaagtaaagtgctctacaaatgagctacatctcagggctcaaagcagg 289
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tctcgtacatgctaagcaaagtgctctacaaatgagctacatctcagggctcaaagcagg 107
Query: 290 tttgtgcaggggagtggttctgatgctctgacacccaattagttctttttctttctttct 349
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 106 tttgtgcaggggagtggttctgatgctctgacacccaattagttctttttctt--tttct 49
Query: 350 ttctctctttctttttttttttttttttttttttt 384
|| ||| ||||||||||||||||||||||||||||
Sbjct: 48 ttttct-tttctttttttttttttttttttttttt 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space: 298724
Effective search space used: 298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
