BAC Information

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BAC

Clone NameMSMg01-371N13
Chromosome19 (Build37)
Map Location 12,812,098 - 12,812,572
singlet/doubletsinglet
Overlap genenone
Upstream geneGif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1
Downstream geneZfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371N13.T7 (MSMg01no371_n13.b1)MSMg01-371N13.TJ (MSMg01no371_n13.g1)
ACCAG478252AG478253
length734717
length of high quality
(start - end)		---472 (52 - 523)
definitionCHROMAT_FILE: MSMg01no371_n13.b1 PHD_FILE: MSMg01no371_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:26 2005CHROMAT_FILE: MSMg01no371_n13.g1 PHD_FILE: MSMg01no371_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAAGGATGTATAAAGGAGAAATTAGTAAC
ATGACACACCACTGCTCCTGAGNCTACATGATATGAAGATATAAATTTAT
GGTATTTAGATCCGGANNACAGCAGAAAGAAATAATATAAAATTTANCAA
ACCCGGTAGTTTTTAANNNTTCTCCCCATTAAAAAGATTGGAAAGTGGGA
AAAAAAGGGATGGCTTGAGTCGGAANATAATCGGAAAGTGGTGTAAAATT
TTGAAAAGGGCCATTTTTCCAAAAAAAAATCCTCCAACTTTTGGGCCCCG
GGAAAAAAAAAAAAAAAAACCCTCTTTTTTTCTCAAACAAAAAAAAAAAA
AAACTTTTTTTTTTGGGGGGGGNCCCNTNTNTTNANAANNACTATTTTTA
TNATTTTCCTCTCCTTCCCNNNCCNTTCTACCTATAACTATATTTAATCC
TATTNTTTTTCAAAANANNAANAATATNTCTTCTTATCTCCTNNATCCCN
NCACACANAAAACCCCCCNCTTCCACCTCCTTTCTTCTTTTTTTCCCCCC
CTCCCCTCCTCCCCTTTTTCTTTCATTCTTTTTTTTCTTNTTTTTTCNCN
ATCTCTACATCACAAAACTCCCCCTTTTCTCTCCTTCCCTCTTTTCTTTT
CTTCCTTATTCTCCTCCCTTTGGGTGTGGGGGGG

TCTAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTCTGTTATGGTCTGTGATCTCTTCCTCTTCACAGAGT
TGTTAGGTGGCTCGGGTCCCCAGAAGTGGATGCTTCCAGACCTTTTTAGG
TGTATAGATGGCTTCAGTTCTACCATATTAATTAAAGTGAATCACAGGAC
CAGAGCATGTTTGCTGTGAGACAAAGATTCTCAGGGATATTCATACTGAA
AGCATGACTAAGAGAATATTATTTTGGAGACCAGTAAAAGTCTGGAAAGA
TACTGCTTTTCCAGAAGAACAGAGTTAGTTTCCCAGGACACACATCAGGC
AGCTCACAATCACCAGTAACTCCAGTTCAAAAGAGACTCAATGCCTCTGG
CCTCTGTGGGCTGTGACACATATATGCATATACATTAAAAATAGTTTTAA
AATTAAAAAAAAACATGTTTAGCTGTAGAAGGAAGAACAGAAGATAATAA
TCACAAATCCAATATCTATGTTATACCCTCTCTCCAGGGGTTCAGGAAAT
TATTTATGAAATAAAGGGGGAAAAAAGATATAAAGTTAAGGAACCGAAAA
GGGAATGGTTGGAAAAATTGTACCCCTTCGGGAAACAAACAGGGGCCCTT
TAAACACCCGGGAACTTCCCCAAACAAGGGGAATGGCTTCCCCTGGCCCC
CTAAAAAATTGGTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_n13.g1 MSMg01no371_n13.g1 CHROMAT_FILE:
MSMg01no371_n13.g1 PHD_FILE: MSMg01no371_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:26 2005
         (472 letters)



>mm_chr19_12811894_12812766
          Length = 873

 Score =  826 bits (427), Expect = 0.0
 Identities = 461/475 (97%), Gaps = 7/475 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctgtta-tggtctgtgatctcttcctcttcacagagttgttaggtggctcg 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttctgtaaatggtctgtgatctcttcctcttcacagagttgttaggtggctcg 264

                                                                       
Query: 64  ggtccccagaagtggatgcttccagacctttttaggtgtatagatggcttcagttctacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtccccagaagtggatgcttccagacctttttaggtgtatagatggcttcagttctacc 324

                                                                       
Query: 124 atattaattaaagtgaatcacaggaccagagcatgtttgctgtgagacaaagattctcag 183
           |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 atatgaattaaagtgaatcacaggaccagagcaggtttgctgtgagacaaagattctcag 384

                                                                       
Query: 184 ggatattcatactgaaagcatgactaagagaatattattttggagaccagtaaaagtctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggatattcatactgaaagcatgactaagagaatattattttggagaccagtaaaagtctg 444

                                                                       
Query: 244 gaaagatactgcttttccagaagaacagagttagtttcccaggacacacatcaggcagct 303
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaagatactgcttttccagaagagcagagttagtttcccaggacacacatcaggcagct 504

                                                                       
Query: 304 cacaatcaccagtaactccagttcaaaagagactcaatgcctctggcctctgtgggctgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacaatcaccagtaactccagttcaaaagagactcaatgcctctggcctctgtgggctgt 564

                                                                       
Query: 364 gacacatatatgcatatacat-----taaaaatagttttaaaattaaaaaaaaa-catgt 417
           |||||||||||||||||||||     |||||||||||||||||| ||||||||| |||||
Sbjct: 565 gacacatatatgcatatacatataattaaaaatagttttaaaataaaaaaaaaaacatgt 624

                                                                  
Query: 418 ttagctgtagaaggaagaacagaagataataatcacaaatccaatatctatgtta 472
           |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 625 ttagctgtagaaggaagaaccgaagataataatcacaaattcaatatctatgtta 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space:   398706
Effective search space used:   398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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