Query= MSMg01no372_c19.b1 MSMg01no372_c19.b1 CHROMAT_FILE:
MSMg01no372_c19.b1 PHD_FILE: MSMg01no372_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:51 2005
(595 letters)
>mm_chr19_22768925_22769924
Length = 1000
Score = 944 bits (488), Expect = 0.0
Identities = 524/538 (97%), Gaps = 5/538 (0%)
Strand = Plus / Minus
Query: 63 tacattgggttgttgtttggggaacactgagaatgacttcaagaagagatcaatcttggc 122
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1000 tacattgggttgttttttggggaacactgagaatgacttcaagaagagaccaatcttggc 941
Query: 123 ttatttgtttgttgagacagattctcactctgtagccctagctagcctagtaataatcct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 940 ttatttgtttgttgagacagattctcactctgtagccctagctagcctagtaataattct 881
Query: 183 gaattctagttggccttgaacttgcagcagttactatcctgaggctcctaagtaccaata 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 gaattctagttggccttgaacttgcagcagttactatcctgaggctcctaagtaccaata 821
Query: 243 gtaaagcatttactatcatgacagacctctggtctaattctgatactataaattcctatg 302
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 820 gtaaagcatttactatcataacagacctctgggctaattctgatactataaattcctatg 761
Query: 303 gaaattcatatgagggttcaataaaatatgtgtagcagtagccaaccctatgtttggatc 362
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 760 gaaattcatatgagggttcaataaaatatgtgtagtagtagccaaccctatgtttggatc 701
Query: 363 aaagagccttggactggccactaatgagatttgaagaaaagttcttactttctctgagtc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 700 aaagagccttggactggccactaatgagatttgaagaaaagttcttactttctctgaatc 641
Query: 423 ttatgtatagca-tatagatcctatgctaccatggagggttttgtgaaaatcagaacaag 481
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ttatgtatagcaatatagatcctatgctaccatggagggttttgtgaaaatcagaacaag 581
Query: 482 gagttcatcttacacatctagcacaaagtaggagctcaccagaactcacaatggctaaca 541
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 580 gagttcatcttacacatctagcacaaagtaggagctcaccaggactcacaatggctaaca 521
Query: 542 tttgttaa----ccaccacgtgcttagatacactaatgaacattgatagggaaggacc 595
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 520 tttgttaagggcccaccacgtgcttagatacactaatgaatattgatagggaaggacc 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 1000
Length adjustment: 10
Effective length of query: 585
Effective length of database: 990
Effective search space: 579150
Effective search space used: 579150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_c19.g1 MSMg01no372_c19.g1 CHROMAT_FILE:
MSMg01no372_c19.g1 PHD_FILE: MSMg01no372_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:51 2005
(538 letters)
>mm_chr19_22551136_22552074
Length = 939
Score = 1011 bits (523), Expect = 0.0
Identities = 535/539 (99%), Gaps = 1/539 (0%)
Strand = Plus / Plus
Query: 1 tgtgagacagagaacagcagacagaaatgaaaaggacacagagaaacagtcaagctaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgagacagagaacagcagacagaaatgaaaaggacacagagaaacagtcaagctaata 260
Query: 61 gaaaaatagtttttagaagacgaagaatcaattttttt-gcttctaaatatctgtcagaa 119
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gaaaaatagtttttagaagacgaagaatcaattttttttgcttctaaatatctgtcagaa 320
Query: 120 ataatctctaagtgagagaactattccatttccactcagtctctcatccttagcacccag 179
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ataatctctaagtgagagaactgttccagttccactcagtctctcatccttagcacccag 380
Query: 180 cactgcgatctacaaatggagctggcccaaattatctaaacaaatgtctacagttcctga 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 cactgcgatctacaaatggagctggcccaaattatctaaacaaatgtctatagttcctga 440
Query: 240 agatagaaacatcctctaatgtctaatgaaaaaatctacactgtaaaaataatcaatgag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatagaaacatcctctaatgtctaatgaaaaaatctacactgtaaaaataatcaatgag 500
Query: 300 taaaggatattaatttcctcaatttaaatgtatactctactgatcataaatattcaaaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaggatattaatttcctcaatttaaatgtatactctactgatcataaatattcaaaat 560
Query: 360 ttagaatcacagttgtccttacttattaaatacctaacttgtctttgttattcttgggtc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagaatcacagttgtccttacttattaaatacctaacttgtctttgttattcttgggtc 620
Query: 420 agtaataaaatcctaagatacctgtctatagtcatgtgctgaagtttcaaatttgtaatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtaataaaatcctaagatacctgtctatagtcatgtgctgaagtttcaaatttgtaatt 680
Query: 480 tataacttctaaagaaggaaagctgcaaacattgtccttggaaaattgacaaactcagg 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tataacttctaaagaaggaaagctgcaaacattgtccttggaaaattgacaaactcagg 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 939
Length adjustment: 10
Effective length of query: 528
Effective length of database: 929
Effective search space: 490512
Effective search space used: 490512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
