Query= MSMg01no372_e04.b1 MSMg01no372_e04.b1 CHROMAT_FILE:
MSMg01no372_e04.b1 PHD_FILE: MSMg01no372_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:58 2005
(353 letters)
>mm_chr19_54688100_54688852
Length = 753
Score = 601 bits (311), Expect = e-176
Identities = 337/355 (94%), Gaps = 16/355 (4%)
Strand = Plus / Plus
Query: 1 attttgttcattttatttatctattcaaattcatgggcataatcatccatggaactgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgttcattttatttatctattcaaattcatgggcataatcatccatggaactgcat 260
Query: 61 cctttcaatattttctcttcattttcactcctagttgatgtgcctttttatctctgtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttcaatattttctcttcattttcactcctagttgatgtgcctttttatctctgtatt 320
Query: 121 cttattaacatttctcagtatattattctataatttgaaaaatagttgttggccttaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttattaacatttctcagtatattattctataatttgaaaaatagttgttggccttaaat 380
Query: 181 tttctatttgatttttgttttataaatatatccttaatcattcatttttactttcatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctatttgatttttgttttataaatatatccttaatcattcatttttactttcatgag 440
Query: 241 tatattttgttgctttttctataatttattaaatgttcatcagtctctctctctctc--t 298
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 441 tatattttgttgctttttctataatttattaaatgttcatcattctctctctctctccct 500
Query: 299 tgctttttttttttttttttttttttttttggaatacaggggattgaacctggag 353
|||||||||||||||| | |||||||||||||||||||||||
Sbjct: 501 tgctttttttttttttgt--------------aatacaggggattgaacctggag 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space: 255936
Effective search space used: 255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_e04.g1 MSMg01no372_e04.g1 CHROMAT_FILE:
MSMg01no372_e04.g1 PHD_FILE: MSMg01no372_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:58 2005
(441 letters)
>mm_chr19_54848371_54849211
Length = 841
Score = 688 bits (356), Expect = 0.0
Identities = 411/432 (95%), Gaps = 8/432 (1%)
Strand = Plus / Minus
Query: 1 cactgctatagaaagagaaattcaaaagtcaacatagcatgaagaggattgccaattgtc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cactactatagaaagagaaattcaaaagtcaacatagcatgaagaggattgccaattgtc 368
Query: 61 ctttggaaataatgaaagaaaatgattttagaaagcatgtaggtgcaaatgccagttggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctttggaaataatgaaagaaaatgattttagaaagcatgtaggtgcaaatgccagttggt 308
Query: 121 tatagaataattatgtagaaatctctttattatataaaatcatcatgttaaagaattcat 180
|||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 307 tatagaataattgtgtagaaatctctttactgtataaaatcatcatgttaaagaattcat 248
Query: 181 gtaccttggtcactaaaagaagaagcatctatatgtgtcttaatcaaacacacacacaca 240
||||| |||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct: 247 gtaccatggtcactaaaataagaagcatctataagtatcttaatcaaacacacacacaca 188
Query: 241 cacacacatacacacacacacacacacatatacaga--cacacacagaacactcaaacac 298
|||||||| ||||||||||||||||||| |||| ||||||||||||| ||| ||||
Sbjct: 187 cacacacacacacacacacacacacaca----cagagacacacacagaacaatcagacac 132
Query: 299 ccttacttcatatgaagggcaacatttaaaagtgaaaagacaaaaatatttttaaatgaa 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ccttacttcatatgaaggacaacatttaaaagtgaaaagacaaaaatatttttaaatgaa 72
Query: 359 agtaatatttactagat-ataaagtttcaaaatttgaagatcactagtaatttaaattta 417
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 agtaatatttactagatga-aaagtttcaaaatttgaagatcactagtaatttaaattta 13
Query: 418 atgagtatcaaa 429
|| |||||||||
Sbjct: 12 ataagtatcaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
