BAC Information

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BAC

Clone NameMSMg01-372H09
Chromosome19 (Build37)
Map Location 11,400,379 - 11,573,813
singlet/doubletdoublet
Overlap geneMs4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c
Upstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276
Downstream geneEG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372H09.T7 (MSMg01no372_h09.b1)MSMg01-372H09.TJ (MSMg01no372_h09.g1)
ACCAG478719AG478720
length756757
length of high quality
(start - end)		506 (62 - 567)489 (71 - 559)
definitionCHROMAT_FILE: MSMg01no372_h09.b1 PHD_FILE: MSMg01no372_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:12 2005CHROMAT_FILE: MSMg01no372_h09.g1 PHD_FILE: MSMg01no372_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(11,400,379 - 11,400,866)(11,573,357 - 11,573,813)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGCATTGCCAAACTGTTCAGGGAAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGCTGTTTTAAACTGCTTTCAAATCACTCCCAA
AAAGTGATGGGAAACTTTCAGAGAGATAGCCCCACAGGAATGACGTGCCC
ATACTGCTAGGGATGCTTCATATCTGCTTGGGATGTTTGTATAAACTTTG
AAGAATAAGCATCTGCTCAGGGAGGTTTATGTTATTGGAAAACAGCAGTT
ACTGCAGACCAAATGCAACAAATGCCTGGCAAATGCTACTAAACTGTGAA
ATTGAAAGAGGCACTGCCCCACCTAGGGATCCATCATGTCTGCAGACACC
AAACCCAAAACTATTGCTGTGGTCAAGAGGTGCTTGCTGACAGGAACCTA
GTATGGTGGTTCCTTGGGAGGTCCTGCCAGCAACTGACCAATGTAGATGT
GGACGCTTGGAGCCACCCATCAGACTGAGCTCAGGGAACCTGTTGGGGGA
GCTGACAGAAGGACCGGAGGAGCAGAGGGGGATTGCAACCCCATTGGAGA
CAACATGGCTGGCCTGACCACCCAGTTCTCCCAGAGTCTAGACCATTCAC
CAAGGAGTTATCCTGGAGGGATCCATGGTTTCCGATACCTATTAACACAA
GGAGGTGCTTGTCTGCAAACCCCTGAAAAGGAAAAGCCCTTGGCTCTGTC
TAAATG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGGTTACTCTTTGTTTCACTGACTTCATC
TGTGCAAGAGTGCATTGGGCACAATTGCTGCCAATCTTTCTGATCTTCAC
ATTGCTAAGAGTCTTCTCAGCGTCTTCCATTGATGAACATTTATACCAGA
GGCTTCAGCTCTTGGCCTGTGTGTCTCCTTAAATGAAGCCAATGATGCTT
TGAATACAAGTTCAGATCACAGACCATCCCAAGTGCAGACTAATTCTGTT
AGATGGGTGTTTAGCCTCCATCTTTTGTTTTTTAATTTTTTATTAGTTAT
TTTCTTTATTTACATTTCAACTGTGATCCCCTTTCCACATTTCCCCTACA
AAAACTCCCTATCCCATCACCAATTCCCCTGCTCACCAATCCACCCACTC
CCACTTCCCTGTCCTGGCATTTCCCTGCACTAGGGCATTGAGCCTTCACA
GGATCAAAGACCTCTCCTCCCACTGATGTCCAACAAGGCCATCCTCTGCT
ACATATGTGGCTGGAGCCATGGGNCCCTCCATGTATACTTTTTTGTTGGG
GGTTTAATCCCTGCGAGCTCTGGGGGNACTGGTTGGGTCATAAAGGTTGT
CTTCCCAAGGGGGGGGAAAACCCTTTCCCTTCTTTCAATCCCTTCTCAAA
CCCCCTTATTGGTGAACCCGCGTTGCTTTCAAAAAAATTGCGGAGGAGAA
CCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_h09.b1 MSMg01no372_h09.b1 CHROMAT_FILE:
MSMg01no372_h09.b1 PHD_FILE: MSMg01no372_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:12 2005
         (506 letters)



>mm_chr19_11400165_11401070
          Length = 906

 Score =  913 bits (472), Expect = 0.0
 Identities = 484/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 15  agagagagagagagagagagagagagagagagagagagagagagctgttttaaactgctt 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 agagagagagagagagagagagagagagagagagagagagagagctgttttaaactgctt 274

                                                                       
Query: 75  tcaaatcactcccaaaaagtgatgggaaactttcagagagatagccccacaggaatgacg 134
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 275 tcaaatcactcccaaaaagtgatgggaaactttcagagagacagccccacaggaatgaca 334

                                                                       
Query: 135 tgcccatactgctagggatgcttcatatctgcttgggatgtttgtataaactttgaagaa 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgcccatactgctagggatgcttcatatctgcttgggatgtttgtataaactttgaagaa 394

                                                                       
Query: 195 taagcatctgctcagggaggtttatgttattggaaaacagcagttactgcagaccaaatg 254
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 395 taagcatctgctcagggaggtttatgttattggaaaacatcagttactgcagaccaaatg 454

                                                                       
Query: 255 caacaaatgcctggcaaatgctactaaactgtgaaattgaaagaggcactgccccaccta 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caacaaatgcctggcaaatgctactaaactgtgaaattgaaagaggcactgccccaccta 514

                                                                       
Query: 315 gggatccatcatgtctgcagacaccaaacccaaaactattgctgtggtcaagaggtgctt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gggatccatcatgtctgcagacaccaaacccaaaactattgctgtggtcaagaggtgctt 574

                                                                       
Query: 375 gctgacaggaacctagtatggtggttccttgggaggtcctgccagcaactgaccaatgta 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gctgacaggaacctagtatggtggttccttgggaggtcctgccagcaactgaccaatgta 634

                                                                       
Query: 435 gatgtggacgcttggagccacccatcagactgagctcagggaacctgttgggggagctga 494
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 635 gatgtggacgcttggagccacccatcagactgagctcagggaccctgttgggggagctga 694

                   
Query: 495 cagaagga 502
           ||||||||
Sbjct: 695 cagaagga 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_h09.g1 MSMg01no372_h09.g1 CHROMAT_FILE:
MSMg01no372_h09.g1 PHD_FILE: MSMg01no372_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:13 2005
         (489 letters)



>mm_chr19_11573357_11574245
          Length = 889

 Score =  822 bits (425), Expect = 0.0
 Identities = 449/457 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggttactctttgtttcactgacttcatctgtgcaagagtgcattgggcacaattgctg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctggttactctttgtatcactgacttcatctgtgcaagagtgcattgggcacaattgctg 398

                                                                       
Query: 61  ccaatctttctgatcttcacattgctaagagtcttctcagcgtcttccattgatgaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ccaatctttctgatcttcacattgctaagagtcttctcagcgtcttccattgatgaacat 338

                                                                       
Query: 121 ttataccagaggcttcagctcttggcctgtgtgtctccttaaatgaagccaatgatgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttataccagaggcttcagctcttggcctgtgtgtctccttaaatgaagccaatgatgctt 278

                                                                       
Query: 181 tgaatacaagttcagatcacagaccatcccaagtgcagactaattctgttagatgggtgt 240
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 277 tgagtacaagttcagatcacagaccatcccaagtgaagactaattctgttagatgggtgt 218

                                                                       
Query: 241 ttagcctccatcttttgttttttaattttttattagttattttctttatttacatttcaa 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tcagcctccatcttttgttttttaattttttattagttattttctttatttacatttcaa 158

                                                                       
Query: 301 ctgtgatcccctttccacatttcccctacaaaaactccctatcccatcaccaattcccct 360
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 157 ctgtgatcccttttccacatttcccctacaaaaactccctatcccatcgccaattcccct 98

                                                                       
Query: 361 gctcaccaatccacccactcccacttccctgtcctggcatttccctgcactagggcattg 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  gctcaccaatccacccattcccacttccctgtcctggcatttccctgcactagggcattg 38

                                                
Query: 421 agccttcacaggatcaaagacctctcctcccactgat 457
           ||||||||||||| |||||||||||||||||||||||
Sbjct: 37  agccttcacaggagcaaagacctctcctcccactgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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