Query= MSMg01no372_i05.b1 MSMg01no372_i05.b1 CHROMAT_FILE:
MSMg01no372_i05.b1 PHD_FILE: MSMg01no372_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:16 2005
(554 letters)
>mm_chr19_12150320_12151271
Length = 952
Score = 812 bits (420), Expect = 0.0
Identities = 529/584 (90%), Gaps = 37/584 (6%)
Strand = Plus / Minus
Query: 4 ggaattcaatagttg-accatttatcgatgacgtaatgaggcaagaagtggcattacaaa 62
|||||||||||| || | ||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 899 ggaattcaatag-tgaaacatttatcgatgatgtaatgaggcaagaagttgcattacaaa 841
Query: 63 -----------------------aaa-aaa-aaa-aaagaaagaaataaagagagagaga 96
||| ||| ||| ||||||||||| ||||| ||| |||
Sbjct: 840 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 781
Query: 97 gagaaagaaagaaaa-----agagccttctatcaaagctccaagcacccctccactagtc 151
|||||||||||||| ||||||| |||||||||||||||||||||||||| |||||
Sbjct: 780 aagaaagaaagaaaataaagagagcctcctatcaaagctccaagcacccctccattagtc 721
Query: 152 cactgcactccatttttctgtgatttctgtgtggctgtgccatttcaccactgtttgata 211
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 720 cactgcactccatttttctgtgatttctgggtggctgtgccatttcaccactgtttgata 661
Query: 212 ttatttccctgcctctcctgttgaaatttattcagacagtgacaaatgcttgtctccact 271
|||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 660 ttatttcccttcctctcctgttgaaatttatccagacagtgacaaattcttgtctccact 601
Query: 272 gttaaagcttaaagtttcctatagctgccctaaatagagccctgtgctttcatgacacta 331
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 600 gttaaagcttaaagtttcctataactgccctaaatagagccctgtgctttcatgacacta 541
Query: 332 ggatataattgtttgatcccacaactgttgtcacactaaatatctgtattttcatcagac 391
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggatataattggttgatcccacaactgttgtcacactaaatatctgtattttcatcagac 481
Query: 392 tgaatactgttccagaataacacctttgctacacctttgggcaatgtagcta-cctaagt 450
||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 480 tgaatactgctccagaataacacctttgctacacctttgtgcaatgtagctagcctacgt 421
Query: 451 ctagtcccaactgtacaataaggaccacaaccaatgtgtgaaaaattactgaaggactca 510
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 420 ctagtcccaactgtacaataaggaccacaaccaatgtgtgaaaaattactg---gactca 364
Query: 511 ttgattaaatgtatacttttgaaaagcctaataaacttggtgtc 554
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttgattaaatgtatacttttgaaaagcctaataaacttggtgtc 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 952
Length adjustment: 10
Effective length of query: 544
Effective length of database: 942
Effective search space: 512448
Effective search space used: 512448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_i05.g1 MSMg01no372_i05.g1 CHROMAT_FILE:
MSMg01no372_i05.g1 PHD_FILE: MSMg01no372_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:17 2005
(559 letters)
>mm_chr19_12028040_12028998
Length = 959
Score = 1035 bits (535), Expect = 0.0
Identities = 553/559 (98%)
Strand = Plus / Plus
Query: 1 atgacatggctaagcaccatgtattttctaaactcaaagtcctaacaatcctcattgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgacatggctaagcaccatgtattttctaaactcaaagtcctaacaatcctcattgcat 260
Query: 61 ttcaaaatgctcattttttttctcttgatactaaaagtgtatgtacattgatcagggcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaaatgctcattttttttctcttgatactaaaagtgtatgtacattgatcagggcat 320
Query: 121 agtggtgcatgcctttaatacctagaacttaggaagcagaggcaggtggatttctgtgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggtgcatgcctttaatacctagaacttaggaagcagaggcaggtggatttctgtgag 380
Query: 181 ttcgaagccagcctgttctatgaagtgagttccaagctagccaaagctatacacagaaaa 240
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ttcgaagctagcctgttctatgaagtgagttccaagatagccaaagctatacacagaaaa 440
Query: 241 ctcggtctcgaaaaaccaaaaataagccagaaatgtatatatcttattacatctcttttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcggtctcgaaaaaccaaaaataagccagaaatgtatatatcttattacatctcttttc 500
Query: 301 agtgttgaaaatgaagtcttacatggcatctttgattcttgtttgcttgtacaagactga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgttgaaaatgaagtcttacatggcatctttgattcttgtttgcttgtacaagactga 560
Query: 361 tcaaatacttgcggtcattgtgctggctccagtaagcttcacttcaaagggtcctgttca 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaatacttgcagtcattgtgctggctccagtaagcttcacttcaaagggtcctgttca 620
Query: 421 tttgattaatgaaaaccaaagtactatgatacttgtggtagctgtactgagttagtttta 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tttgattaatgaaaaccaaagtactatgatacttgtggtagctgtactgagttattttta 680
Query: 481 ggtgctgctccgccctttgagctttgggaggcgtggtgatagttacagagggttaagacg 540
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 681 ggtgctgctccgccctttgagctttgggaggtgtggtgatagttacagagggttaagatg 740
Query: 541 ccatgactgtcatggctga 559
|||||||||||||||||||
Sbjct: 741 ccatgactgtcatggctga 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
