Query= MSMg01no373_c10.b1 MSMg01no373_c10.b1 CHROMAT_FILE:
MSMg01no373_c10.b1 PHD_FILE: MSMg01no373_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:03 2005
(566 letters)
>mm_chr19_33156672_33157638
Length = 967
Score = 1023 bits (529), Expect = 0.0
Identities = 553/561 (98%), Gaps = 1/561 (0%)
Strand = Plus / Plus
Query: 7 gaattcatcctctctgcgaaa-agaccttcttttgacctagcaatttccgttaatggaac 65
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatcctctctgagaaacagaccttcttttgacctagcaatttccgttaatggaac 266
Query: 66 tgcatgagaacactctggacaaaagtgaagagtactccagcttaagtggactaaaaacat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgcatgagaacactctggacaaaagtgaagagtactccagcttaagtggactaaaaacat 326
Query: 126 aaattcattacgtctagtgtcaagaagcgtccatcagctctgttcacaaatgtatctctc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaattcattacgtctagtgtcaagaagcgtccatcagctctgttcacaaatgtatctctc 386
Query: 186 agccctgagttcgcctctctagttacaagaaccctgctcattcttagagacaagctgacc 245
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agccctgagttagcctctctagttacaagaaccctgctcattcttagagacaagctgacc 446
Query: 246 tccactcagccatggctatttggcagcaccattttgatgcccactggagtcatttcaaag 305
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 447 tccactcagccatggctatttggcagcaccattttgatacccactggagtcatttcaaag 506
Query: 306 gtttctaataagaaataaatgatatcctaatattattagtaaagactaaaaatcatctat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtttctaataagaaataaatgatatcctaatattattagtaaagactaaaaatcatctat 566
Query: 366 ccataatggttgggactggccaaatgatttggacttcatttttaaacgttgacagaattt 425
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 567 ccataatggttgggactggccaaatgatttggacttcatttttaaaagttgacagaattt 626
Query: 426 gtacatatctacaaatatctgaactgtaaattttatatctatgtagaagatatatatcta 485
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 627 gtacatatatacaaatatctgaactgtaaattttatatgtatgtagaagatatatatcta 686
Query: 486 tatatatctatgagatatttggggaatgagatctaattataaacaaaaaatttatacaac 545
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 687 tatatatctatgagatatttggggaatgagatctaattataaacaaagaatttatacaac 746
Query: 546 tcttgtcagctttctgtcttt 566
|||||||||||||||||||||
Sbjct: 747 tcttgtcagctttctgtcttt 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_c10.g1 MSMg01no373_c10.g1 CHROMAT_FILE:
MSMg01no373_c10.g1 PHD_FILE: MSMg01no373_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:03 2005
(447 letters)
>mm_chr19_33299386_33300233
Length = 848
Score = 835 bits (432), Expect = 0.0
Identities = 444/450 (98%), Gaps = 5/450 (1%)
Strand = Plus / Minus
Query: 1 atataagaaaataacagggaacttagatcagcttgtaggaaaagccacgtgagcctgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 atataagaaaataacagggaacttagatcagcttgtaggaaaagccacgtgagcctgaag 589
Query: 61 tctgatgacatgaagacaagaacagcactggagagagaggttctgctctagagccacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tctgatgacatgaagacaagaacagcactggagagagaggttctgctctagagccacaaa 529
Query: 121 ggaggccaccatgtgtcgagcaatatgccctgggcataggcacttacagtgaactcaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ggaggccaccatgtgtcgagcaatatgccctgggcataggcacttacagtgaactcaggc 469
Query: 181 tgggccctgctagaacccttgaatgtcatttttagtgtaatgtttaagcatttgacatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgggccctgctagaacccttgaatgtcatttttagtgtaatgtttaagcatttgacatat 409
Query: 241 tcca---tattttgactgggcgggaagaagatgaagttagggaagcgagggtataaacac 297
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tccagagaa--ttgactgggcgggaagaagatgaagttagggaagcgagggtataaacac 351
Query: 298 aaaaccacagctggagcaatgaactgaaaccccagtcgaacagtacagtggctccgagga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaaaccacagctggagcaatgaactgaaaccccagtcgaacagtacagtggctccgagga 291
Query: 358 gagtatggcggccagcgatatggcataagcacctggcttcagggttttagaagtgacagc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gagtatggcggccagcgatatggcataagcacctggcttcagggttttagaagtgacagc 231
Query: 418 tacaggccttacagaggcatcgcatatggg 447
||||||||||||||||||||||||||||||
Sbjct: 230 tacaggccttacagaggcatcgcatatggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 848
Length adjustment: 10
Effective length of query: 437
Effective length of database: 838
Effective search space: 366206
Effective search space used: 366206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
