CTCACAAATTCGAGAGGATGCGCGGAATTCTATGATATTGCCAATTCATC
TAAATGGCATTAATTCCTGAAAGTTCATCTTGAGGTTGCTCTGCAGGACC
TCTGCTCAATACAGTGAGCCAATGCTCAGGAGTCCATAGGGTAATAGTGA
CAGGAAAGGCATATCAGCTGCAAAAAGCAATCCTGGGATGAAGTCCCTTG
GGGCCTTGCCTTTCAGAAATCACCCATCTTAGACCATGGAAAAATGGTTG
CTAGCCACCTCCCTAAAGGTCACCTGCTAGCCTTAGCCTTTCCTGGATGG
CCCTTCATGGTGTAGCAAGGAAAGTAAAGCAGAAGCAAACGAGATTCAAA
CTGGACAAAAGTTGACCTGTGGGAGATGATGCTTCACCTTGCTCCAAACA
GACCTTGGCTTGGCAAATCACTGAGCTATGCAGACTCCTCTAAGCTTACC
TTACCCCACAAGGATGGGACGTGTGGTAGAGAAGCAATCACAGCGATGGT
CTCTCTATAGGAGGAGGACTTATTTTCATACATCTAAAACCTGAGCATGA
GTCACACTTCAACAGAAAGGAATTCTGTGGTAGATGTACTGAAAGCCAGA
GTCCTAAAGCTCTATGGCAGTGACTGCTCCACTTGAACGCCTTTGGCTCA
CCTTTCAGATCCCTTAGCGAATTCTATTTGGTAGAGTTATGCTGGTCTCC
TGTTGAACTTTGCTACATTATATT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTACTGTGTACACGCTAGTGCTACAG
TCCATGTGCATAAACCTGCGGCCCATGGTAAACCTGGTTTATGGAAAGGC
TGGTCCTTTATAGCTGTTCTGTTGGCAAATATCATTTCAATGATAAACTG
GGAGGATTATGCTTTTTAAAAATATGTATCTGAGGTTTTTCTGTATACAT
AAGGTACACACACCACCACCACCACCACCAACATTAACAGCAACAACATC
AACAACAATGACAATAAAAATTTTTTATCAAAAACAGGACAGAAAGTACT
GGACAAGGGTCTTGGCTTTTCTTTTTTTAAAAAAAGGACTTTATAATTTT
TAGATAAAAATGAAGGTAGCTCATGAACATGGGAGAAAATGAAACATCAT
CCTGAGTGATATAACTGAGACCCCCCAAAGGACATATATGGCATGCACTC
ACTAATAAGTAGATATTAGCTAAAAAAGTATAGAATACCCAGGATACAAT
CCACAGAACTCAAGGAGCTTAACAGACGGAATGGCCCAAGTGAGGTTGCC
TCAGTCCCACTTGGGAGGTAAAAGAACGAAATCTTGTGGGTTGTGCCTAA
CACATTTTTTTTTTTCTTTTCCCTCTATACCCCCCCTCCTTCCTTCCCTT
TCAATAATCTTCTTCCTTCCCACATCTTTTCATTTTTTCTTTCAT

Query= MSMg01no373_p06.b1 MSMg01no373_p06.b1 CHROMAT_FILE:
MSMg01no373_p06.b1 PHD_FILE: MSMg01no373_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:01 2005
         (482 letters)



>mm_chr19_50578373_50579254
          Length = 882

 Score =  814 bits (421), Expect = 0.0
 Identities = 424/425 (99%)
 Strand = Plus / Minus

                                                                       
Query: 58  ctgctcaatacagtgagccaatgctcaggagtccatagggtaatagtgacaggaaaggca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ctgctcaatacagtgagccaatgctcaggagtccatagggtaatagtgacaggaaaggca 823

                                                                       
Query: 118 tatcagctgcaaaaagcaatcctgggatgaagtcccttggggccttgcctttcagaaatc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tatcagctgcaaaaagcaatcctgggatgaagtcccttggggccttgcctttcagaaatc 763

                                                                       
Query: 178 acccatcttagaccatggaaaaatggttgctagccacctccctaaaggtcacctgctagc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 acccatcttagaccatggaaaaatggttgctagccacctccctaaaggtcacctgctagc 703

                                                                       
Query: 238 cttagcctttcctggatggcccttcatggtgtagcaaggaaagtaaagcagaagcaaacg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 cttagcctttcctggatggcccttcatggtgtagcaaggaaagtaaagcagaagcaaacg 643

                                                                       
Query: 298 agattcaaactggacaaaagttgacctgtgggagatgatgcttcaccttgctccaaacag 357
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 642 agattcaaactggacaaaagttgacctgtgggagatgatgcttcaccttgttccaaacag 583

                                                                       
Query: 358 accttggcttggcaaatcactgagctatgcagactcctctaagcttaccttaccccacaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 accttggcttggcaaatcactgagctatgcagactcctctaagcttaccttaccccacaa 523

                                                                       
Query: 418 ggatgggacgtgtggtagagaagcaatcacagcgatggtctctctataggaggaggactt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggatgggacgtgtggtagagaagcaatcacagcgatggtctctctataggaggaggactt 463

                
Query: 478 atttt 482
           |||||
Sbjct: 462 atttt 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_p06.g1 MSMg01no373_p06.g1 CHROMAT_FILE:
MSMg01no373_p06.g1 PHD_FILE: MSMg01no373_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:01 2005
         (244 letters)



>mm_chr19_50382180_50382823
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgtgtacacgctagtgctacagtccatgtgcataaacctgcggcccatggtaaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactgtgtacacgctagtgctacagtccatgtgcataaacctgcggcccatggtaaacct 260

                                                                       
Query: 61  ggtttatggaaaggctggtcctttatagctgttctgttggcaaatatcatttcaatgata 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttatggaaaggctggtcctttatagctgttctgttggcaaatatcatttcaatgata 320

                                                                       
Query: 121 aactgggaggattatgctttttaaaaatatgtatctgaggtttttctgtatacataaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgggaggattatgctttttaaaaatatgtatctgaggtttttctgtatacataaggt 380

                                                                       
Query: 181 acacacaccaccaccaccaccaccaacattaacagcaacaacatcaacaacaatgacaat 240
           |||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||
Sbjct: 381 acacacaccaccaccaacaacaacaacaataacagcaacaacatcaacaacaatgacaat 440

               
Query: 241 aaaa 244
           ||||
Sbjct: 441 aaaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)