BAC Information

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BAC

Clone NameMSMg01-374C09
Chromosome19 (Build37)
Map Location 17,959,890 - 17,960,255
singlet/doubletsinglet
Overlap genenone
Upstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374C09.T7 (MSMg01no374_c09.b1)MSMg01-374C09.TJ (MSMg01no374_c09.g1)
ACCAG480012AG480013
length782837
length of high quality
(start - end)
435 (45 - 479)93 (76 - 168)
definitionCHROMAT_FILE: MSMg01no374_c09.b1 PHD_FILE: MSMg01no374_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:17 2005CHROMAT_FILE: MSMg01no374_c09.g1 PHD_FILE: MSMg01no374_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATTATCTCCCTAAATCCTATTTAATCTCTGCTTTGACAGGTACC
CAGTTAGTCACCTCCTCAGAGTCCAAGGGCATTAAATACACTGTAGAAAG
TGTTGAGCATAGTTTGTGGGATGGAAAACATTTTCCATAAAAGGAAGCCA
TTATCCTGACTGATTATTTTAATCTCTTTCATTACCTTAAGGACCATAAA
GACAGGGACCCAATCATGTTTCTTTGTAGCTCCTTGGCAATTAGTGCAGT
TCCTGGCACATAGTTGGCTTAATAAATGTTTATTGAAGAAATGAAGTTGC
TTATTTCACATTTTTCTTTTTCCTATGCCCTATGGACCCCATTTGGTTAG
AGTAATAATTGCCATCTGAAGCAAGCATTTATATCATTGATCCAAATTCC
TCTAANAAATGCAACCTAGTATATGCAGGAGAAACAGAGTTTAAAAATGA
CCCTTACTCGTGTCTAGTACTTAAGAAAAACCCTTCCCAAGACCTGATTA
AATTGTTGGTTAAGAACCATCACTGCTTACATTTCCACATAAGTATGAAA
TTATATTGAAGGACCTTTCAAAAATCTTCCTAAGGTTTGGGGTCAACGGA
CGGTTCCCTCAACCCAGGAAGGGGGGGACACCCCGTTTTTGCCTAAAACA
AAAGGGATTTTGTTATTGTGGGAACCCTTTCTGGCCCCCTTGGGGACAGG
ATAAATTCCACCTCTTATCTTTGGGGTATTTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACATTTTCTAAGTACTTTCCTAAT
ATCTAGAAGCAGGGATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATATGTGTGTAGTGTGTGGGGGGGGGGGGG
GGGGAGGGAGGGCGAGAGTGAGCGCGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGG
GGGAGAGAGAGAGAGAGAGAGAGATATTTTTATAGAGAGAGAGATCGAGG
CGCCCAGGCCGCCAGTCGGGCGCCCGGGGGGGCGGGGGGGGGGGGGGGGG
GGCGGCGGGGGGGCGGCGCCCCCGCCTCCGCGGCTGCTCGCGGGGCGGGG
GGCGGCCGCGGGCGGGCGGGGGCGGGCGCGCGCGCGGGGGCGCGGCCCCC
GCGGGCGGGCCGGCGCCGCGCCCGGGTCGGGCCGTGCGTCCCGTCCCGTC
GGTGGGGGGGGCGGCGTGCGCGCCGCGGGGGCGAGGCGGGGGGCCGCGGG
GCCGCGCGTGCGGGACCGGCCGCCGCGGGTGGGGGCCTGTGGGCGGGCGG
GGGGTGTGTCTGTCGGGCGCGCGGGCGGCCGCGGGCTCGCTCGCGCGCGG
GTGGTGTGCCGGGCGTGGCGCGTGCGGGGGGCGCGGGGGGGCGGGGCCGT
GTGCGGGGCGGGGGTGGTGGGCGGCGGCGCCGGCTCGGCGGGCGGCGTGG
CGCGGGGGGGCGGGCCGGGGCGGGGCGGGCGCGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_c09.b1 MSMg01no374_c09.b1 CHROMAT_FILE:
MSMg01no374_c09.b1 PHD_FILE: MSMg01no374_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:17 2005
         (435 letters)



>mm_chr19_17959890_17960724
          Length = 835

 Score =  700 bits (362), Expect = 0.0
 Identities = 365/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcattatctccctaaatcctatttaatctctgctttgacaggtacccagttag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaattctcattatctccctaaatcctatttaatctctgctttgacaggtacccagttag 307

                                                                       
Query: 64  tcacctcctcagagtccaagggcattaaatacactgtagaaagtgttgagcatagtttgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcacctcctcagagtccaagggcattaaatacactgtagaaagtgttgagcatagtttgt 247

                                                                       
Query: 124 gggatggaaaacattttccataaaaggaagccattatcctgactgattattttaatctct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gggatggaaaacattttccataaaaggaagccattatcctgactgattattttaatctct 187

                                                                       
Query: 184 ttcattaccttaaggaccataaagacagggacccaatcatgtttctttgtagctccttgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcattaccttaaggaccataaagacagggacccaatcatgtttctttgtagctccttgg 127

                                                                       
Query: 244 caattagtgcagttcctggcacatagttggcttaataaatgtttattgaagaaatgaagt 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 caaatagtgcagttcctggcacatagttggcttaataaatgtttattgaagaaatgaagt 67

                                                                       
Query: 304 tgcttatttcacatttttctttttcctatgccctatggaccccatttggttagagtaata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  tgcttatttcacatttttctttttcctatgccctatggaccccatttggttagagtaata 7

                 
Query: 364 attgcc 369
           ||||||
Sbjct: 6   attgcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)