BAC Information

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BAC

Clone NameMSMg01-374F10
Chromosome19 (Build37)
Map Location 13,280,896 - 13,447,851
singlet/doubletdoublet
Overlap geneOlfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467
Upstream geneOlfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462
Downstream geneOlfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374F10.T7 (MSMg01no374_f10.b1)MSMg01-374F10.TJ (MSMg01no374_f10.g1)
ACCAG480158AG480159
length788773
length of high quality
(start - end)		502 (74 - 575)415 (57 - 471)
definitionCHROMAT_FILE: MSMg01no374_f10.b1 PHD_FILE: MSMg01no374_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:33 2005CHROMAT_FILE: MSMg01no374_f10.g1 PHD_FILE: MSMg01no374_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,447,350 - 13,447,851)(13,280,896 - 13,281,310)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGACTGTTCCAACTGCTACATTTTCTTTCTTGTGACTAAATCTT
CTTAAAATTCTTACTTTAAAGGAATTTTTCATTTGGACATATAGTATTCC
CTCTGTTGATTTATATTCTCTTTCATCCTGTCACACCATAACAAAATCAC
TAAGACCAGTATAAAATTGACCATTTATAGGGATGTATTTCTCTTACAAA
TTGCTTACAAGAATGTTCTGTTTAGAAAAAACATTTGATATGACACAATT
TTCATATATTAACAACGTTTTAACATTTACACATTTTTGTTTGCTTAGAT
ATTGAAACTTGCAATTTACTTAGGCTGATCCTCAAATCCAAGGATGAATT
TATCTTCTTGCCTCAGTTTTGAGAACAGCTGCAACAAAAGATATTTTTAA
CTGACGCCTTTGGAAATATATCCACCCGAAGCAACCTCTTATTCCCTACC
ACAATTCGTCTAANATTCTTGAAATTTTAGGTAATGAACTATTGTTAGGA
CTATTTTCAGGAAATACTATAATCCACAATTGACAAGTGATTAATACATC
AATGTGTAAATAGGGCATTATGAGTATTTTTCTTTGTATGTAACCACTGA
AGAAACTGAGAGGTTAAAAATTAACCAGAACTTCAAAATTTTGGATTTAT
TTTGAAAAAAAATTCAGGGATTTTAACCCCAGAACCTTCAAAAATTTTAT
CTTTTCTAAAAAAAAAATGGAAGGGCCCCTCTCCTAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAATGCTTTGCAAGCAACCAGATTCTGGGAACATGGGAATTCTGG
AATAGGTTAGCATGATATTCATACACAAATTGGCCTAAAAATAGGCTCAT
AGAGAAATACAGAAGAGAATTTAATTAACGATAGGTACATAGGAAAGAAT
ATTAATCCAAGTTATATAAAAAGAAAGAGGTTATGAATAGTTCCACAGAA
ACTTATTTCCTTAGAAGGGAAGAATTAAAGAACTTCAAGGCTTTAATCTC
AAATATAGGAACAAAGGCCCAGAGTTATGGAGAAACCCTATCTCAACAGA
TAAAAATAAAGAGATATTAATATCCACAGAAAGTGGAATAAAGGAAAATG
ACATTGTTTTATGGATATAAGGGAGAAATTGTGGTAGTTTCTTTAAATGT
TTCTAAATAATAAATGTTTTAAATGGTGTTAAACAGCTGCTAATTTCCAT
AGAAGGGAGGAATAAAGGGAAACTACATTGTGTTTTAGGATAGAAAGGAG
AAAAAGCGGTAATTGGTAAGTTATTTAAAGAGAAAATTTGATGGAATTAT
TTTTCCCCGATATTATCCTCCCTTTCAGGGGAATAATTTTCGAATTTTTT
AGGATCTTGGTGACGCCCTCTGATCCACATGGGGTAAACAAGGGTTGGCA
AAACGGGGAATCTCCCTTCTCCATAAAATAACAAATTTAAAAATGCGTTT
AATGGTTTTCGGTTGTGGTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_f10.b1 MSMg01no374_f10.b1 CHROMAT_FILE:
MSMg01no374_f10.b1 PHD_FILE: MSMg01no374_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:33 2005
         (502 letters)



>mm_chr19_13447150_13448051
          Length = 902

 Score =  957 bits (495), Expect = 0.0
 Identities = 500/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattttctttcttgtgactaaatcttcttaaaattcttactttaaaggaatttttcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 acattttctttcttgtgactaaatcttcttaaaattcttactttaaaggaatttttcatt 643

                                                                       
Query: 61  tggacatatagtattccctctgttgatttatattctctttcatcctgtcacaccataaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tggacatatagtattccctctgttgatttatattctctttcatcctgtcacaccataaca 583

                                                                       
Query: 121 aaatcactaagaccagtataaaattgaccatttatagggatgtatttctcttacaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aaatcactaagaccagtataaaattgaccatttatagggatgtatttctcttacaaattg 523

                                                                       
Query: 181 cttacaagaatgttctgtttagaaaaaacatttgatatgacacaattttcatatattaac 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 522 cttacaagaatgttctgtttagcaaaaacatttgatatgacacaattttcatatattaac 463

                                                                       
Query: 241 aacgttttaacatttacacatttttgtttgcttagatattgaaacttgcaatttacttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aacgttttaacatttacacatttttgtttgcttagatattgaaacttgcaatttacttag 403

                                                                       
Query: 301 gctgatcctcaaatccaaggatgaatttatcttcttgcctcagttttgagaacagctgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gctgatcctcaaatccaaggatgaatttatcttcttgcctcagttttgagaacagctgca 343

                                                                       
Query: 361 acaaaagatatttttaactgacgcctttggaaatatatccacccgaagcaacctcttatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acaaaagatatttttaactgacgcctttggaaatatatccacccgaagcaacctcttatt 283

                                                                       
Query: 421 ccctaccacaattcgtctaanattcttgaaattttaggtaatgaactattgttaggacta 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccctaccacaattcgtctaaaattcttgaaattttaggtaatgaactattgttaggacta 223

                                 
Query: 481 ttttcaggaaatactataatcc 502
           ||||||||||||||||||||||
Sbjct: 222 ttttcaggaaatactataatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_f10.g1 MSMg01no374_f10.g1 CHROMAT_FILE:
MSMg01no374_f10.g1 PHD_FILE: MSMg01no374_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:33 2005
         (415 letters)



>mm_chr19_13280696_13281510
          Length = 815

 Score =  787 bits (407), Expect = 0.0
 Identities = 413/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgctttgcaagcaaccagattctgggaacatgggaattctggaataggttagcatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgctttgcaagcaaccagattctgggaacatgggaattctggaataggttagcatgat 260

                                                                       
Query: 61  attcatacacaaattggcctaaaaataggctcatagagaaatacagaagagaatttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcatacacaaattggcctaaaaataggctcatagagaaatacagaagagaatttaatt 320

                                                                       
Query: 121 aacgataggtacataggaaagaatattaatccaagttatataaaaagaaagaggttatga 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacgataagtacataggaaagaatattaatccaagttatataaaaagaaagaggttatga 380

                                                                       
Query: 181 atagttccacagaaacttatttccttagaagggaagaattaaagaacttcaaggctttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagttccacagaaacttatttccttagaagggaagaattaaagaacttcaaggctttaa 440

                                                                       
Query: 241 tctcaaatataggaacaaaggcccagagttatggagaaaccctatctcaacagataaaaa 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tctcaaatataggaacaaaggcccagagttatggagaaaccctaactcaacagataaaaa 500

                                                                       
Query: 301 taaagagatattaatatccacagaaagtggaataaaggaaaatgacattgttttatggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagagatattaatatccacagaaagtggaataaaggaaaatgacattgttttatggat 560

                                                                  
Query: 361 ataagggagaaattgtggtagtttctttaaatgtttctaaataataaatgtttta 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataagggagaaattgtggtagtttctttaaatgtttctaaataataaatgtttta 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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