Query= MSMg01no377_d19.b1 MSMg01no377_d19.b1 CHROMAT_FILE:
MSMg01no377_d19.b1 PHD_FILE: MSMg01no377_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:21 2005
(478 letters)
>mm_chr19_30292984_30293861
Length = 878
Score = 857 bits (443), Expect = 0.0
Identities = 467/475 (98%)
Strand = Plus / Minus
Query: 4 ggaattcaaggcattaccaagttgaagccactggctacatcacagccaggatcaggaaca 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggaattcaaggcagcaggaagttgaagccactggctacatcacagccaggatcaggaaca 619
Query: 64 gaaagcaatgaatttctatgactagccggctttctcctctgatcattctgatagggaata 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaaagcaatgaatttctatgaatagccggctttctcctctgatcattctgatagggaata 559
Query: 124 ggagtggtaaacaggggcacttcaatattctctaatataaagacacacttgtactccata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 558 ggagtggtaaacaggggcacttcaatattctctaatataaagacacacttgtattccata 499
Query: 184 ttattaaaaagacacctacaatatacatattattatcagtttaacctgtctatgccacca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttattaaaaagacacctacaatatacatattattatcagtttaacctgtctatgccacca 439
Query: 244 gggtttgtcctgagcccagcccctggcccacagcccagagtcctctgtagaggcacaagg 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 438 gggtttgtcctgagcccagcccctgggccacagcccagagtcctctgtagaggcacaagg 379
Query: 304 ttgataactgccgaagctaaccccacttgtcatttgaggaggtgtctgagccatgcaagg 363
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 378 ttgataactgccgaagctaaccccacttgtcatttgagggggtgtctgagccatgcaagg 319
Query: 364 gataatgataagagatgtaagagatgctcggatatgagacatctcagaaatgtggctgac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gataatgataagagatgtaagagatgctcggatatgagacatctcagaaatgtggctgac 259
Query: 424 caccacctgaccagcaagacaagaaattctagagtggctgaccacccgccttccc 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 caccacctgaccagcaagacaagaaattctagagtggctgaccacccgccttccc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_d19.g1 MSMg01no377_d19.g1 CHROMAT_FILE:
MSMg01no377_d19.g1 PHD_FILE: MSMg01no377_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:21 2005
(485 letters)
>mm_chr19_30138409_30139293
Length = 885
Score = 911 bits (471), Expect = 0.0
Identities = 483/487 (99%), Gaps = 3/487 (0%)
Strand = Plus / Plus
Query: 1 aggttcttgtgtttgtatggcaagcactttaacacctgaggtctctctccatcctttgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggttcttgtgtttgtatggcaagcactttaacacctgaggtctctctccatcctttgat 260
Query: 61 aatgttaaattttacataccaagctctaagataatttcttacatggataactcaaataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgttaaattttacataccaagctctaagataatttcttacatggataactcaaataat 320
Query: 121 ttgcagcacagtggtagttcatgaggaaaccaactctactacataatttttcaaaggtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcagcacagtggtagttcatgaggaaaccaactctactacataatttttcaaaggtta 380
Query: 181 tattcatgaaattgtatgtctccagagcctaagtgttatccagtaggaggtcagatcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattcatgaaattgtatgtctccagagcctaagtgttatccagtaggaggtcagatcctc 440
Query: 241 tggagttggagttagaagtagttgtgagccacccaaaagggtgctggaaactgagctttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggagttggagttagaagtagttgtgagccacccaaaagggtgctggaaactgagctttg 500
Query: 301 gtcctctggaagaagaaagagtgctcttaaccactggttgat-atcttcagcctgtttta 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 gtcctctggaagaagaaagagtgctcttaaccactggttgattatcttcagcctgtttta 560
Query: 360 c-tgcattagggtctcatgtagctcagagtggccttgaacttgcttttgtagctgagata 418
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cat-cattagggtctcatgtagctcagagtggccttgaacttgcttttgtagctgagata 619
Query: 419 gacttacattcccagtctatcccccaggtgctggggttagaaacatgcactgcatctagg 478
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gacttacattcccagtctatctcccaggtgctggggttagaaacatgcactgcatctagg 679
Query: 479 ttcaagt 485
|||||||
Sbjct: 680 ttcaagt 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
