Query= MSMg01no378_f03.b1 MSMg01no378_f03.b1 CHROMAT_FILE:
MSMg01no378_f03.b1 PHD_FILE: MSMg01no378_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:47 2005
(518 letters)
>mm_chr19_55622174_55623089
Length = 916
Score = 862 bits (446), Expect = 0.0
Identities = 489/514 (95%), Gaps = 18/514 (3%)
Strand = Plus / Minus
Query: 5 gaattcagttcactatacacctttgaacaccagggaagcaagcagccactgttgctgagg 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaattcagttcactataaacctttgaacaccagggaagcaagcagccactgttgctgagg 438
Query: 65 gcttagttttcagtcaggcaggattccgctggtgtcccatacgggccggaccatgttttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 437 gcttagttttcagtcaggcaggattccgctggtgtcccatacgggccggactatgttttg 378
Query: 125 gctttacccagcactactctggaacaggatttcttctctcatctacttgccacttgattc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gctttacccagcactactctggaacaggatttcttctctcatctacttgccacttgattc 318
Query: 185 tcattggcctgttttccccattgctccctctcctttgcctcctggcttctcgtaactgac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcattggcctgttttccccattgctccctctcctttgcctcctggcttctcgtaactgac 258
Query: 245 aacctactcttaacttctgcaagacaaagccttctaatttttaaaagactctttttatgt 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 257 aacctactcttaacttctgcaagacaaagccttctaattttt--aagactctttt----- 205
Query: 305 atgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgcatgtgcgccgca 364
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 -----------tatgtatgtatgtatgtatgtatgtatgtatgtatgcatgtgcgccgca 156
Query: 365 tgcatgcttgggggctgaggaggctaggacaggtgtgggcggattccccgaactgaggac 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 155 tgcatgcttgggggctgaggaggctaggagaggtgtgggcggattccccgaactgaggac 96
Query: 425 acacacagctgtgagctgccatgttgtgggtcctctgagaagctgccaatgctctaattg 484
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 95 acacacagttgtgagctgccatgttgtgggtcctctgagaagctgccagtgctctaactg 36
Query: 485 ttgagtcatctcttcagtcaccaccctcccctca 518
||||||||||||||||| ||||||||||||||||
Sbjct: 35 ttgagtcatctcttcagccaccaccctcccctca 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 916
Length adjustment: 10
Effective length of query: 508
Effective length of database: 906
Effective search space: 460248
Effective search space used: 460248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_f03.g1 MSMg01no378_f03.g1 CHROMAT_FILE:
MSMg01no378_f03.g1 PHD_FILE: MSMg01no378_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:47 2005
(545 letters)
>mm_chr19_55415653_55416597
Length = 945
Score = 994 bits (514), Expect = 0.0
Identities = 539/550 (98%), Gaps = 5/550 (0%)
Strand = Plus / Plus
Query: 1 tttatctttaaactgaccgcttttgagttgtttgttataccctgaggtagatcctacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatctttaaactgaccgcttttgagttgtttgttataccctgaggtagatcctacaga 260
Query: 61 agtatgtagaaagtcagaaagacacacttgggggtgtggggatcattgctagtgtatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 agtatgtagaaagtcagaaagacacacttgggggtgtggggatcattgctagtatatttc 320
Query: 121 ctacctgaaagggtttcctgtcttctggcagtgttcagaaactgtcagaaagcaaagctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ctacctgaaagggtttcctgtcttctggcagtgttcagaaactgtcagaaagcaaagccg 380
Query: 181 ggctttctgactgaagtgaagtgggaagtggccatagatggcagtgtggctcacactgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctttctgactgaagtgaagtgggaagtggccatagatggcagtgtggctcacactgat 440
Query: 241 gttaaaatacaccgtggtgtggcattttcatagagaaatttccaagaccaaatccatcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaaaatacaccgtggtgtggcattttcatagagaaatttccaagaccaaatccatcca 500
Query: 301 aggatattctctttgcattaaaagttgacttttctccctgagcagtctataaatatagca 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 aggatattctctttgcattaaaagttgacttttctccctgagcagtttataaatatagca 560
Query: 361 taatcagaagtgtgccctgcatctcagagcatcttcctgagcacaaggctgctagaagct 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtcagaagtgtgccctgcatctcagagcatcttcctgagcacaaggctgctagaagct 620
Query: 421 ggctgcctggtgctctggatggggtctttggaaactggatttgcttttcacactgtctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctgcctggtgctctggatggggtctttggaaactggatttgcttttcacactgtctct 680
Query: 481 gcaaaacctctttccataggtaacacctcaaattctgaactatagtgt-----ccttctg 535
||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 681 gcaaaacctctttccataggtaacatctcaaattctgaactaaagtgtagcgtccttctg 740
Query: 536 catcctcctt 545
||||||||||
Sbjct: 741 catcctcctt 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
